Browse Element(s) Details


Os.26546.1.S1_at

Description gb:AK063910.1
DB_XREF= gi:32973928
TID=Os.26546.1
CNT=21
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26546 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-123-A05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-123-A05, full insert sequence.
FL= gb:AK063910.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4397011/11AAA-type ATPase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g43934Os.24654.2.S1_x_at11/1111+26018150..26024227pentatricopeptide, putative, expressed
LOC_Os11g43934Os.24654.1.S1_at10/1111+26018150..26024227pentatricopeptide, putative, expressed
LOC_Os11g43934OsAffx.16132.1.S1_at1/1111+26018150..26024227pentatricopeptide, putative, expressed
LOC_Os11g43950Os.27044.1.A1_at11/1111+26036058..26042520expressed protein
LOC_Os11g43960Os.23064.1.S1_at9/1111+26043095..26045690ADP,ATP carrier protein 2, mitochondrial precursor, putative, expressed
LOC_Os11g43970Os.26546.1.S1_at11/1111+26046155..26052730AAA-type ATPase family protein, putative, expressed
LOC_Os11g43980Os.11563.1.S1_at11/1111+26065476..26067337Peroxidase 1 precursor, putative, expressed
LOC_Os11g43990Os.6129.1.S1_at11/1111+26070342..26075297expressed protein
LOC_Os11g44000OsAffx.7402.1.S1_at11/1111+26076954..26079793hypothetical protein
LOC_Os11g44000OsAffx.31466.1.S1_x_at1/1111+26076954..26079793hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26546.1.S1_at--1161--5551Chr11:26046654..26046678 (25 bp)
GAAAGCACTGAGCTACTTCATGTGA
LOC_Os11g43970
Os.26546.1.S1_at--323--6011Chr11:26046631..26046655 (25 bp)
GAGAGCGATTCCATCATAACATGTG
LOC_Os11g43970
Os.26546.1.S1_at--916--6011Chr11:26046605..26046629 (25 bp)
GAGAGATTAAGACCCTGCCATATTG
LOC_Os11g43970
Os.26546.1.S1_at--148--231Chr11:26046580..26046604 (25 bp)
ATATTGTACAGTCGCTATACCACCC
LOC_Os11g43970
Os.26546.1.S1_at--218--3651Chr11:26046470..26046494 (25 bp)
CTTCGTCCTCCATCGTGTAATTAAA
LOC_Os11g43970
Os.26546.1.S1_at--97--1731Chr11:26046433..26046457 (25 bp)
ACCAGTTCAGGTTTATTTGTCAGCT
LOC_Os11g43970
Os.26546.1.S1_at--361--9671Chr11:26046414..26046438 (25 bp)
TCAGCTGTTTGTTGCTCGAGTTAAC
LOC_Os11g43970
Os.26546.1.S1_at--781--2951Chr11:26046385..26046409 (25 bp)
AATGTTATCATTGCCTTACCCCAAT
LOC_Os11g43970
Os.26546.1.S1_at--145--231Chr11:26046313..26046337 (25 bp)
ATATAGTCCTTGTGTACCTCTGTAC
LOC_Os11g43970
Os.26546.1.S1_at--331--351Chr11:26046264..26046288 (25 bp)
ATAAGAACATTGTCCTGTTGTCGAC
LOC_Os11g43970
Os.26546.1.S1_at--248--731Chr11:26046233..26046257 (25 bp)
ATGATTCTGACTAGCCATGGGTTGT
LOC_Os11g43970
Target Sequence 
GAAAGCACTGAGCTACTTCATGTGAGAGCGATTCCATCATAACATGTGAGAGAGATTAAGACCCTGCCATATTGATATTG
TACAGTCGCTATACCACCCCTCTTGGCAAGCGCTTCGCGACTTGGCCGGCCAAAACCAGTCGGGTTTTTTCCTCTTCTCC
CTTCAGGAGCAGCGGCCGCCCTACCTTCGTCCTCCATCGTGTAATTAAATTGTGTACTGAAACCAGTTCAGGTTTATTTG
TCAGCTGTTTGTTGCTCGAGTTAACTTGTAATGTTATCATTGCCTTACCCCAATGCCACCTCTTTTTTTCCCCCCTCTTC
TGCATCCTTGGCTGTAGTAGCATATAGTCCTTGTGTACCTCTGTACATGTTGAAATCAAAGGACATGGGAATAAGAACAT
TGTCCTGTTGTCGACAGTATAATGATTCTGACTAGCCATGGGTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26546.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis