Browse Element(s) Details


Os.26654.1.S1_at

Description gb:AK102556.1
DB_XREF= gi:32987765
TID=Os.26654.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26654 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative protein kinase (OSJNBa0046L02.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033097G03, full insert sequence.
FL= gb:AK061113.1 gb:AK102556.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0106011/11U-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g01044Os.17906.1.S1_at10/1110+30118..42506Tic62 protein, putative, expressed
LOC_Os10g01044OsAffx.6538.1.S1_x_at7/1110+30118..42506Tic62 protein, putative, expressed
LOC_Os10g01044OsAffx.6538.1.S1_at1/1110+30118..42506Tic62 protein, putative, expressed
LOC_Os10g01060Os.26654.2.S1_x_at11/1110+51290..57140U-box domain containing protein, expressed
LOC_Os10g01060Os.26654.1.S1_at11/1110+51290..57140U-box domain containing protein, expressed
LOC_Os10g01060Os.26654.1.S1_a_at11/1110+51290..57140U-box domain containing protein, expressed
LOC_Os10g01070OsAffx.20824.1.S1_at10/1110+59581..60476hypothetical protein
LOC_Os10g01080Os.11788.1.S1_at8/1110+65261..66414pyridoxin biosynthesis protein ER1, putative, expressed
LOC_Os10g01080Os.36435.2.S1_x_at5/1110+65261..66414pyridoxin biosynthesis protein ER1, putative, expressed
LOC_Os10g01090OsAffx.20823.2.S1_x_at11/1110+69449..70417retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g01090OsAffx.20823.2.S1_at11/1110+69449..70417retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g01090OsAffx.22945.1.S1_at1/1110+69449..70417retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g01100Os.20092.1.S1_at11/1110+79108..81917Protein kinase domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26654.1.S1_at--1047--2851Chr10:56654..56678 (25 bp)
AAGTGATGCATGATCCCCAGGTGGG
LOC_Os10g01060
Os.26654.1.S1_at--294--6651Chr10:56688..56712 (25 bp)
GTTGACGTACGAAGGGCGCGCCATT
LOC_Os10g01060
Os.26654.1.S1_at--665--4151Chr10:56704..56728 (25 bp)
CGCGCCATTTCCGAGTTGATGGACA
LOC_Os10g01060
Os.26654.1.S1_at--882--571Chr10:56770..56794 (25 bp)
ATCCATGACTGGCTCTCTCAGAGAT
LOC_Os10g01060
Os.26654.1.S1_at--835--1271Chr10:56791..56815 (25 bp)
AGATCAACTCCTTTCTGATTTTCCC
LOC_Os10g01060
Os.26654.1.S1_at--86--1011Chr10:56818..56842 (25 bp)
AGGATCTGGATTTTGTATGTACACA
LOC_Os10g01060
Os.26654.1.S1_at--54--10071Chr10:56855..56879 (25 bp)
TAGTCAGTCTGTTTGTTAGTAGCAC
LOC_Os10g01060
Os.26654.1.S1_at--12--191Chr10:56914..56938 (25 bp)
ATTTCAAGTTTCATGTATCGAGCAA
LOC_Os10g01060
Os.26654.1.S1_at--249--10431Chr10:56963..56987 (25 bp)
TTAGGAGCTATGTTCAGGGCAGTCG
LOC_Os10g01060
Os.26654.1.S1_at--302--1151Chr10:56983..57007 (25 bp)
AGTCGGAGTATCTTGCTAGTTGCCC
LOC_Os10g01060
Os.26654.1.S1_at--26--9771Chr10:56999..57023 (25 bp)
TAGTTGCCCGTTTGGTCTAAGTAGC
LOC_Os10g01060
Target Sequence 
AAGTGATGCATGATCCCCAGGTGGGGGCGGACGGGTTGACGTACGAAGGGCGCGCCATTTCCGAGTTGATGGACAATGGC
CCTCCAATCACCCCCAACCACGCCCTTCGTTTTGCCATCCATGACTGGCTCTCTCAGAGATCAACTCCTTTCTGATTTTC
CCCAAGGATCTGGATTTTGTATGTACACATTGTTTATTTCATAGTCAGTCTGTTTGTTAGTAGCACATGCATGATGTAAC
GAAATAATAATAGAGTAAATATTTCAAGTTTCATGTATCGAGCAAATGTCACTGTACATATAGAGTGAGTTAGGAGCTAT
GTTCAGGGCAGTCGGAGTATCTTGCTAGTTGCCCGTTTGGTCTAAGTAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26654.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis