Browse Element(s) Details


Os.26654.2.S1_x_at

Description gb:NM_194472.1
DB_XREF= gi:37530303
TID=Os.26654.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.26654 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative protein kinase (OSJNBa0046L02.4), mRNA.
PROD=putative protein kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0106011/11U-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g01044Os.17906.1.S1_at10/1110+30118..42506Tic62 protein, putative, expressed
LOC_Os10g01044OsAffx.6538.1.S1_x_at7/1110+30118..42506Tic62 protein, putative, expressed
LOC_Os10g01044OsAffx.6538.1.S1_at1/1110+30118..42506Tic62 protein, putative, expressed
LOC_Os10g01060Os.26654.2.S1_x_at11/1110+51290..57140U-box domain containing protein, expressed
LOC_Os10g01060Os.26654.1.S1_at11/1110+51290..57140U-box domain containing protein, expressed
LOC_Os10g01060Os.26654.1.S1_a_at11/1110+51290..57140U-box domain containing protein, expressed
LOC_Os10g01070OsAffx.20824.1.S1_at10/1110+59581..60476hypothetical protein
LOC_Os10g01080Os.11788.1.S1_at8/1110+65261..66414pyridoxin biosynthesis protein ER1, putative, expressed
LOC_Os10g01080Os.36435.2.S1_x_at5/1110+65261..66414pyridoxin biosynthesis protein ER1, putative, expressed
LOC_Os10g01090OsAffx.20823.2.S1_x_at11/1110+69449..70417retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g01090OsAffx.20823.2.S1_at11/1110+69449..70417retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g01090OsAffx.22945.1.S1_at1/1110+69449..70417retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g01100Os.20092.1.S1_at11/1110+79108..81917Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26654.2.S1_x_at--675--5951Chr10:55987..56011 (25 bp)
GAGCAAGTGCGGCATTCCTCAGTTG
LOC_Os10g01060
Os.26654.2.S1_x_at--1131--2271Chr10:56019..56043 (25 bp)
AAATCCGTGCACGTATTGTTGCTGA
LOC_Os10g01060
Os.26654.2.S1_x_at--113--3771Chr10:56055..56079 (25 bp)
CTCTATTCTTCTTGCATTCCTGTAA
LOC_Os10g01060
Os.26654.2.S1_x_at--848--2631Chr10:56079..56103 (25 bp)
AACCTCAGATGATTGTCCACGGTGA
LOC_Os10g01060
Os.26654.2.S1_x_at--15--10351Chr10:56125..56149 (25 bp)
TTTAGATGCCAACCTGCACTGCAAG
LOC_Os10g01060
Os.26654.2.S1_x_at--487--2271Chr10:56237..56261 (25 bp)
AAATCTGACATATACTCCTTTGGGA
LOC_Os10g01060
Os.26654.2.S1_x_at--571--9771Chr10:56316..56340 (25 bp)
TAAGGCGTGCAATGTCCAGTGGAAA
LOC_Os10g01060
Os.26654.2.S1_x_at--88--1151Chr10:56435..56459 (25 bp)
AGTCCAGAGCTGCTGACTCCAGAAA
LOC_Os10g01060
Os.26654.2.S1_x_at--964--8151Chr10:56473..56497 (25 bp)
GGAACAGCTCCACCTGATGAGGGAT
LOC_Os10g01060
Os.26654.2.S1_x_at--931--351Chr10:56496..56520 (25 bp)
ATAATAGACAAGTGCCCTCCTTCTT
LOC_Os10g01060
Os.26654.2.S1_x_at--953--4531Chr10:56526..56550 (25 bp)
GCCCGATCCTCAAGGCAAGAACGAA
LOC_Os10g01060
Target Sequence 
GAGCAAGTGCGGCATTCCTCAGTTGCCATGGAAAATCCGTGCACGTATTGTTGCTGAAATCTCAAGTGCTCTATTCTTCT
TGCATTCCTGTAAACCTCAGATGATTGTCCACGGTGACTTGAAGCTTGAAAACATCCTTTTAGATGCCAACCTGCACTGC
AAGATAGCTGATTGTGGTATTTCTCAATTATTCATGGAAGATGCCAAGGACGCAGACCCGGAATACCGGAGAAGCAAACC
ATTGACACCCAAATCTGACATATACTCCTTTGGGATTGTGATACTCCAGTTACTAACTGGGAAGCAGGCTGCAGGCCTTC
CCAGCGAAGTAAGGCGTGCAATGTCCAGTGGAAAGCTATGGTCATTGTTAGATCCAACAGCTGGAGAGTGGCCTCTGGAG
GTGGCTCGAAGGTTAGCAGAGTTGGGGCTCAAGTGCAGTGAGGCAGCAAGTCCAGAGCTGCTGACTCCAGAAACTGTGCG
AGATCTGGAACAGCTCCACCTGATGAGGGATAATAGACAAGTGCCCTCCTTCTTCCTGTGCCCGATCCTCAAGGCAAGAA
CGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26654.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis