Browse Element(s) Details


Os.26721.1.S1_at

Description gb:AK067274.1
DB_XREF= gi:32977292
TID=Os.26721.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26721 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative methionyl-tRNA synthetase (OSJNBa0050N08.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013098H24, full insert sequence.
FL= gb:AK067274.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2605011/11methionyl-tRNA synthetase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g26010Os.46333.1.S1_at11/1110+13136168..13137937Cys/Met metabolism PLP-dependent enzyme family protein, expressed
LOC_Os10g26010Os.46333.1.S1_x_at11/1110+13136168..13137937Cys/Met metabolism PLP-dependent enzyme family protein, expressed
LOC_Os10g26020NANA10+13141522..13141989retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g26030OsAffx.20369.1.S1_at11/1110+13142778..13146554retrotransposon protein, putative, unclassified
LOC_Os10g26040Os.46012.2.S1_x_at9/1110+13152703..13158814retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g26040Os.46012.3.S1_x_at6/1110+13152703..13158814retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g26040Os.27088.1.A1_x_at3/1110+13152703..13158814retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g26040Os.45902.1.A1_x_at2/1110+13152703..13158814retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g26040OsAffx.22094.1.S1_at1/1110+13152703..13158814retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g26050Os.26721.1.S1_at11/1110+13161357..13165343methionyl-tRNA synthetase, putative, expressed
LOC_Os10g26060Os.12807.1.S1_x_at11/1110+13165843..13167972Glutelin type-A 2 precursor, putative, expressed
LOC_Os10g26060Os.12807.2.S1_x_at11/1110+13165843..13167972Glutelin type-A 2 precursor, putative, expressed
LOC_Os10g26060Os.22346.2.S1_x_at2/1110+13165843..13167972Glutelin type-A 2 precursor, putative, expressed
LOC_Os10g26060OsAffx.27508.71.S1_s_at2/1110+13165843..13167972Glutelin type-A 2 precursor, putative, expressed
LOC_Os10g26070OsAffx.20368.1.S1_at11/1110+13170422..13172377pentatricopeptide, putative
LOC_Os10g26080Os.27435.1.S1_x_at7/1110+13177175..13179828transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g26080Os.46334.1.S1_x_at3/1110+13177175..13179828transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g26090OsAffx.22421.1.S1_at3/1110+13183434..13186468transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g26090OsAffx.22421.2.S1_at3/1110+13183434..13186468transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g26100OsAffx.18403.1.S1_at11/1110+13189495..13189851hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006418biological_processtRNA aminoacylation for protein translation
GO:0006431biological_processmethionyl-tRNA aminoacylation
GO:0005739cellular_componentmitochondrion
GO:0004812molecular_functionaminoacyl-tRNA ligase activity
GO:0004825molecular_functionmethionine-tRNA ligase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26721.1.S1_at--346--2411Chr10:13164600..13164624 (25 bp)
AAACAAGATCCAGCCAGTTGCGCAA
LOC_Os10g26050
Os.26721.1.S1_at--145--6691Chr10:13164616..13164640 (25 bp)
GTTGCGCAACTGTGATGAAAACCTC
LOC_Os10g26050
Os.26721.1.S1_at--584--2371Chr10:13164634..13164658 (25 bp)
AAACCTCAGTTGGAATTGTGTACCT
LOC_Os10g26050
Os.26721.1.S1_at--214--5211Chr10:13164646..13164670 (25 bp)
GAATTGTGTACCTCCTGGCATGTTT
LOC_Os10g26050
Os.26721.1.S1_at--31--9051Chr10:13164798..13164822 (25 bp)
TGCAGCAGCTAAATCTAAGTCCAGA
LOC_Os10g26050
Os.26721.1.S1_at--137--5371Chr10:13164821..13164845 (25 bp)
GAAGAGCACCTATCATTTTGTGATG
LOC_Os10g26050
Os.26721.1.S1_at--1138--1371Chr10:13164872..13164896 (25 bp)
AGACCTTGGGATCTCATACCATCAG
LOC_Os10g26050
Os.26721.1.S1_at--45--311Chr10:13164887..13164911 (25 bp)
ATACCATCAGGCCACAGGATAGGGA
LOC_Os10g26050
Os.26721.1.S1_at--566--10051Chr10:13164906..13164930 (25 bp)
TAGGGAAACCTGCACCTTTGTTCAA
LOC_Os10g26050
Os.26721.1.S1_at--548--3171Chr10:13165077..13165101 (25 bp)
AATTGAGGACTCAAGTCGCCGCACA
LOC_Os10g26050
Os.26721.1.S1_at--1011--7231Chr10:13165091..13165115 (25 bp)
GTCGCCGCACAATTGGAAGCCACAA
LOC_Os10g26050
Target Sequence 
AAACAAGATCCAGCCAGTTGCGCAACTGTGATGAAAACCTCAGTTGGAATTGTGTACCTCCTGGCATGTTTGCTGGAGCC
TTTCATGCCAACATTCTCAAAAGATGTTCTGCAGCAGCTAAATCTAAGTCCAGAAGAGCACCTATCATTTTGTGATGAAA
AAGGAGAGGTTGAGAAGGCCAAAAGACCTTGGGATCTCATACCATCAGGCCACAGGATAGGGAAACCTGCACCTTTGTTC
AAGGGATTGGAAAACGAAGCGGTGAAGGGCTTGAGAGAAAAATTTGCAGGCAGCCAAGCTGAAAGAAAATTGAGGACTCA
AGTCGCCGCACAATTGGAAGCCACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26721.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis