Browse Element(s) Details


Os.26723.1.S1_at

Description gb:AK103622.1
DB_XREF= gi:32988831
TID=Os.26723.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26723 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033133M18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033133M18, full insert sequence.
FL= gb:AK103622.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3046011/11Vps52/Sac2 family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g30440OsAffx.13128.1.S1_at10/113+17310893..17314218hypothetical protein
LOC_Os03g30440Os.55650.1.A1_at3/113+17310893..17314218hypothetical protein
LOC_Os03g30440Os.52979.1.S1_at1/113+17310893..17314218hypothetical protein
LOC_Os03g30450OsAffx.31892.5.S1_x_at4/113+17319125..17327289retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g30450OsAffx.17842.1.S1_at3/113+17319125..17327289retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g30450OsAffx.31892.5.S1_at3/113+17319125..17327289retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g30450OsAffx.31892.1.S1_x_at1/113+17319125..17327289retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g30460Os.26723.1.S1_at11/113+17331418..17341791Vps52/Sac2 family protein, putative, expressed
LOC_Os03g30470Os.36593.2.S1_x_at1/113+17345786..17346766Basic endochitinase 2 precursor, putative, expressed
LOC_Os03g30470Os.51172.1.S1_x_at1/113+17345786..17346766Basic endochitinase 2 precursor, putative, expressed
LOC_Os03g30470Os.2692.1.S1_x_at1/113+17345786..17346766Basic endochitinase 2 precursor, putative, expressed
LOC_Os03g30500OsAffx.25299.1.S1_at11/113+17355163..17355787hypothetical protein
LOC_Os03g30510OsAffx.13129.1.S1_at11/113+17358678..17363851hypothetical protein
LOC_Os03g30519Os.20030.1.S1_at11/113+17364930..17367884expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009860biological_processpollen tube growth
GO:0005794cellular_componentGolgi apparatus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26723.1.S1_at--749--10371Chr03:17331928..17331952 (25 bp)
TTTTAGCAACTTCCTCTGCGGAATG
LOC_Os03g30460
Os.26723.1.S1_at--168--5071Chr03:17331880..17331904 (25 bp)
GCAGCTGCTGCTGTACTATACAAGG
LOC_Os03g30460
Os.26723.1.S1_at--517--8631Chr03:17331829..17331853 (25 bp)
TGGTGGCTCTGCTCTCAACAAGGAC
LOC_Os03g30460
Os.26723.1.S1_at--345--8591Chr03:17331803..17331827 (25 bp)
TGGTTTCCATATCCTCTATCTTATA
LOC_Os03g30460
Os.26723.1.S1_at--696--2251Chr03:17331768..17331792 (25 bp)
AAATACTCCAGGACCTTTTAGTCAG
LOC_Os03g30460
Os.26723.1.S1_at--355--10371Chr03:17331753..17331777 (25 bp)
TTTTAGTCAGTACTGGTCCTGCCAT
LOC_Os03g30460
Os.26723.1.S1_at--495--7791Chr03:17331739..17331763 (25 bp)
GGTCCTGCCATGTACACTGGTGTAT
LOC_Os03g30460
Os.26723.1.S1_at--656--6551Chr03:17331547..17331571 (25 bp)
GATTAGCGATTAGCTGCCTATCAGT
LOC_Os03g30460
Os.26723.1.S1_at--505--4451Chr03:17331532..17331556 (25 bp)
GCCTATCAGTCAGCCATTCAGATGT
LOC_Os03g30460
Os.26723.1.S1_at--665--731Chr03:17331480..17331504 (25 bp)
ATGTTCTTTAATTGTCTGGCGGTGT
LOC_Os03g30460
Os.26723.1.S1_at--683--6951Chr03:17331447..17331471 (25 bp)
GTAGAAACTTATCCCCGCCTGTGGA
LOC_Os03g30460
Target Sequence 
TTTTAGCAACTTCCTCTGCGGAATGGAGATCCTGAAAGCGGCACTCACGCAGCTGCTGCTGTACTATACAAGGATCACCG
AGTGTGTCAAGAAGATCAATGGTGGCTCTGCTCTCAACAAGGACCTGGTTTCCATATCCTCTATCTTATATGAGATCAAG
AAATACTCCAGGACCTTTTAGTCAGTACTGGTCCTGCCATGTACACTGGTGTATTATTCTCATGTAACGAAAATCCTGAT
ATATGCTATGCATGTTGGTTGGGTTTGACACGGAACTCTNNGTTTCTCTTGCTATTTGGCAGATGTTAAGAAATTACACG
GGGGTGTATCTAAAATAGTTTTTCGATTGAGAGTAATGGCTGTTTGTGGTAGATCGTTGAGCTGATTAGCGATTAGCTGC
CTATCAGTCAGCCATTCAGATGTTCTTTAATTGTAGTCATAGCCATTCAGATGTTCTTTAATTGTCTGGCGGTGTTTGGG
ACCGTAGAAACTTATCCCCGCCTGTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26723.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis