Browse Element(s) Details


Os.26783.2.S1_x_at

Description gb:NM_196629.1
DB_XREF= gi:37534617
TID=Os.26783.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.26783 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) unknown protein (OSJNBa0019M20.1), mRNA.
PROD=unknown protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2953010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g29490OsAffx.22848.3.S1_x_at11/1110+14983679..14990610retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g29490OsAffx.22848.4.S1_at2/1110+14983679..14990610retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g29490OsAffx.22848.4.S1_x_at1/1110+14983679..14990610retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g29502Os.46514.1.S1_at10/1110+14997293..15000942expressed protein
LOC_Os10g29502Os.46514.2.S1_x_at6/1110+14997293..15000942expressed protein
LOC_Os10g29502Os.46514.2.S1_at1/1110+14997293..15000942expressed protein
LOC_Os10g29514Os.12052.1.S1_at11/1110+15001215..15006732expressed protein
LOC_Os10g29514Os.46514.2.S1_x_at5/1110+15001215..15006732expressed protein
LOC_Os10g29514OsAffx.21636.1.S1_x_at2/1110+15001215..15006732expressed protein
LOC_Os10g29530Os.26783.1.S1_at11/1110+15008816..15011868expressed protein
LOC_Os10g29530Os.26783.2.S1_x_at10/1110+15008816..15011868expressed protein
LOC_Os10g29530Os.57299.1.S1_at9/1110+15008816..15011868expressed protein
LOC_Os10g29540Os.46677.1.S1_at11/1110+15012493..15021359EDR1, putative, expressed
LOC_Os10g29560Os.26516.1.S2_s_at11/1110+15031169..15039671transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g29560Os.26516.1.S1_a_at11/1110+15031169..15039671transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g29560Os.5321.1.S1_at11/1110+15031169..15039671transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26783.2.S1_x_at--722--1751Chr10:15010319..15010343 (25 bp)
ACCTCTTCCTCGGATACCAAGAATT
LOC_Os10g29530
Os.26783.2.S1_x_at--640--3911NONE
CTGGCAGTGCATGGATTGTTGGAAA
NONE
Os.26783.2.S1_x_at--618--8151Chr10:15010575..15010599 (25 bp)
GGAAAGTTTGCATATTATACCGCCT
LOC_Os10g29530
Os.26783.2.S1_x_at--695--231Chr10:15010586..15010610 (25 bp)
ATATTATACCGCCTTGCAAGCAAGT
LOC_Os10g29530
Os.26783.2.S1_x_at--983--5151Chr10:15010601..15010625 (25 bp)
GCAAGCAAGTCCTATTTTCATTTTG
LOC_Os10g29530
Os.26783.2.S1_x_at--836--8071Chr10:15010652..15010756 (25 bp)
GGAGCTAGCTAACATAATACTTACT
LOC_Os10g29530
Os.26783.2.S1_x_at--1080--9531Chr10:15010861..15010885 (25 bp)
TCTACGCCATACTTATGTTGACAGC
LOC_Os10g29530
Os.26783.2.S1_x_at--752--9771Chr10:15010930..15010954 (25 bp)
TAATGGGTCTGGTTCAATTTCTGGA
LOC_Os10g29530
Os.26783.2.S1_x_at--758--7171Chr10:15011126..15011150 (25 bp)
GTCTGCGGAGAACACGGGTACTATT
LOC_Os10g29530
Os.26783.2.S1_x_at--102--1071Chr10:15011283..15011303 (21 bp)
AGGGAGGATTATCCATCGGACTTCC
LOC_Os10g29530
Os.26783.2.S1_x_at--365--5691Chr10:15011297..15011321 (25 bp)
GACTTCCAGTCGCAGGCAACCGATA
LOC_Os10g29530
Target Sequence 
ACCTCTTCCTCGGATACCAAGAATTGGCATGGCTGCTGGCAGTGCATGGATTGTTGGAAAGTTTGCATATTATACCGCCT
TGCAAGCAAGTCCTATTTTCATTTTGGAAGGTGGAGAAGAGCGCATGAAGATGGAGCTAGCTAACATAATACTTACTAAG
CATAATGATGAAAAGACACTGGTTGAAGCTGTAAAACAACACTTCTTTGCTGAGCATCTGTTTAGTGATCAGTATCAAGA
TATGCCACTTTTCAGGTGGCGTCTACGCCATACTTATGTTGACAGCACTTTTATGGAAAGGGTGAAGGAGATCGAAGTTA
AGAACTCAAGTAATGGGTCTGGTTCAATTTCTGGACACAGAACTACAAACACTAGATCATTTGGAGACCTCATGGAGGAT
CCACTGGCTTGTATACTTGGTTCTCCAGACGGCGACATAGAAAACAAGAAGTCTGCGGAGAACACGGGTACTATTGTGAA
GAGAAGGGAGGATTATCCATCGGACTTCCAGTCGCAGGCAACCGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26783.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis