Browse Element(s) Details


Os.26801.1.A1_at

Description gb:CB618005
DB_XREF= gi:29612992
DB_XREF=OSIIEa01J06.r
CLONE=OSIIEa01J06
TID=Os.26801.1
CNT=7
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.26801 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T02706 (A.thaliana) T02706 hypothetical protein T18E12.13 - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3936011/11Eukaryotic aspartyl protease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g39320Os.24577.1.S1_at11/1112+24157896..24164087early-responsive to dehydration protein, putative, expressed
LOC_Os12g39320Os.5169.1.S1_at11/1112+24157896..24164087early-responsive to dehydration protein, putative, expressed
LOC_Os12g39320Os.34829.1.S1_at1/1112+24157896..24164087early-responsive to dehydration protein, putative, expressed
LOC_Os12g39330Os.56201.1.S1_at11/1112+24169201..24170641AP2 domain containing protein, expressed
LOC_Os12g39340Os.57018.1.S1_at11/1112+24171221..24174707glycosyl transferase, group 1 family protein, expressed
LOC_Os12g39350NANA12+24175111..24175722hypothetical protein
LOC_Os12g39360Os.26801.1.A1_at11/1112+24179016..24181680Eukaryotic aspartyl protease family protein, expressed
LOC_Os12g39370Os.18505.1.S1_at10/1112+24181881..24184314expressed protein
LOC_Os12g39370Os.21767.1.S1_at6/1112+24181881..24184314expressed protein
LOC_Os12g39380Os.51716.1.S1_at11/1112+24184828..24191415transposon protein, putative, Mutator sub-class, expressed
LOC_Os12g39380Os.5361.1.S1_at11/1112+24184828..24191415transposon protein, putative, Mutator sub-class, expressed
LOC_Os12g39389NANA12+24198971..24199256NA
LOC_Os12g39400Os.16453.1.S1_at11/1112+24203630..24204843Zinc finger, C2H2 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26801.1.A1_at--715--2512Chr12:24181199..24181223 (25 bp)
AACTTTACTCCAGACCTAGCTGTTG
LOC_Os12g39360
Os.26801.1.A1_at--212--6611Chr12:24181238..24181262 (25 bp)
GTTGGAGTCCTACTAAATAGGCCCA
LOC_Os12g39360
Os.26801.1.A1_at--788--4671Chr12:24181270..24181294 (25 bp)
GCGGATTTACTATTTCACTTACGAC
LOC_Os12g39360
Os.26801.1.A1_at--919--8311Chr12:24181306..24181330 (25 bp)
GGCTCTTATATTTCACTTTTTCATT
LOC_Os12g39360
Os.26801.1.A1_at--612--3611Chr12:24181370..24181394 (25 bp)
CTTGCAGTTACATTTAGTTCCAGTG
LOC_Os12g39360
Os.26801.1.A1_at--106--10051Chr12:24181384..24181408 (25 bp)
TAGTTCCAGTGCACTTACACTCAGT
LOC_Os12g39360
Os.26801.1.A1_at--331--10491Chr12:24181398..24181422 (25 bp)
TTACACTCAGTTACAGTGCGCCAAA
LOC_Os12g39360
Os.26801.1.A1_at--947--6751Chr12:24181407..24181431 (25 bp)
GTTACAGTGCGCCAAAAATAGATTT
LOC_Os12g39360
Os.26801.1.A1_at--836--131Chr12:24181504..24181528 (25 bp)
ATTAGCCGAAACTGTCACGTGGACG
LOC_Os12g39360
Os.26801.1.A1_at--234--3271Chr12:24181556..24181580 (25 bp)
CAACTATGAGAGTCGTTTTGCACCG
LOC_Os12g39360
Os.26801.1.A1_at--1091--6091Chr12:24181565..24181589 (25 bp)
GAGTCGTTTTGCACCGATTTAAATA
LOC_Os12g39360
Target Sequence 
AACTTTACTCCAGACCTAGCTGTTGGAATTATATTAGGAGTTGGAGTCCTACTAAATAGGCCCAAAGAAAAGCGGATTTA
CTATTTCACTTACGACAATTTTTTNGTGGCTCTTATATTTCACTTTTTCATTCATAGGATGTTNCATCAAGATCTGTGTT
NTTGTATCTAACTTGCAGTTACATTTAGTTCCAGTGCACTTACACTCAGTTACAGTGCGCCAAAAATAGATTTACAGTAG
NTTTTTCTTTAGATTTATGATTCNTTGACATGTTTGTCTTTTTTGTTATTGGTTGAAAATNGATATATTAGCCGAAACTG
TCACGTGGACGACANATTAGCCGAAACCACCCTCAAAACAACTATGAGAGTCGTTTTGCACCGATTTAAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26801.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis