Browse Element(s) Details


Os.26802.1.S1_at

Description gb:AK061470.1
DB_XREF= gi:32971488
TID=Os.26802.1
CNT=19
FEA=FLmRNA
TIER=FL+Stack
STK=9
UG=Os.26802 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-207-B07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-308-D07, full insert sequence.
FL= gb:AK061444.1 gb:AK105784.1 gb:AK061470.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0813011/11amino acid transporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g08090Os.26802.2.S1_at11/1112+4119914..4122046amino acid transporter, putative, expressed
LOC_Os12g08100Os.46306.1.S1_x_at3/1112+4126211..4129542transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g08110Os.45976.1.S1_x_at1/1112+4131874..4135599transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g08120OsAffx.31640.1.S1_at11/1112+4137588..4137797hypothetical protein
LOC_Os12g08130Os.26802.1.S1_at11/1112+4143608..4145607amino acid transporter, putative, expressed
LOC_Os12g08140Os.50327.1.S1_at11/1112+4162623..4166892pentatricopeptide, putative, expressed
LOC_Os12g08140OsAffx.11634.2.S1_x_at2/1112+4162623..4166892pentatricopeptide, putative, expressed
LOC_Os12g08140OsAffx.11634.1.S1_x_at2/1112+4162623..4166892pentatricopeptide, putative, expressed
LOC_Os12g08150OsAffx.7522.1.S1_at11/1112+4167848..4168426hypothetical protein
LOC_Os12g08160OsAffx.19549.1.S1_at11/1112+4169586..4170398hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006865biological_processamino acid transport
GO:0015800biological_processacidic amino acid transport
GO:0015802biological_processbasic amino acid transport
GO:0015804biological_processneutral amino acid transport
GO:0015810biological_processL-aspartate transport
GO:0015827biological_processL-tryptophan transport
GO:0005887cellular_componentintegral to plasma membrane
GO:0016020cellular_componentmembrane
GO:0015171molecular_functionamino acid transporter activity
GO:0015172molecular_functionacidic amino acid transporter activity
GO:0015174molecular_functionbasic amino acid transporter activity
GO:0015175molecular_functionneutral amino acid transporter activity
GO:0015359molecular_functionamino acid permease activity
GO:0015399molecular_functionprimary active transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26802.1.S1_at--1057--3411Chr12:4143803..4143827 (25 bp)
CAGTCTATGGACGTAGTACAGTAAA
LOC_Os12g08130
Os.26802.1.S1_at--190--2891Chr12:4143759..4143783 (25 bp)
AAGGGAGCAGTAGAATCCTTGCAGG
LOC_Os12g08130
Os.26802.1.S1_at--567--3091Chr12:4143729..4143753 (25 bp)
AATACTGAGATGTAACTACTGAGCA
LOC_Os12g08130
Os.26802.1.S1_at--911--6011Chr12:4143723..4143747 (25 bp)
GAGATGTAACTACTGAGCATTTTGT
LOC_Os12g08130
Os.26802.1.S1_at--687--9811Chr12:4143717..4143741 (25 bp)
TAACTACTGAGCATTTTGTAGCGCT
LOC_Os12g08130
Os.26802.1.S1_at--663--1971Chr12:4143712..4143736 (25 bp)
ACTGAGCATTTTGTAGCGCTCAAAC
LOC_Os12g08130
Os.26802.1.S1_at--1102--151Chr12:4143705..4143729 (25 bp)
ATTTTGTAGCGCTCAAACAGGTACA
LOC_Os12g08130
Os.26802.1.S1_at--1158--8751Chr12:4143701..4143725 (25 bp)
TGTAGCGCTCAAACAGGTACAGAGG
LOC_Os12g08130
Os.26802.1.S1_at--583--751Chr12:4143653..4143677 (25 bp)
ATGGAGGTTGGCGTAATATAATTGA
LOC_Os12g08130
Os.26802.1.S1_at--84--4031Chr12:4143642..4143666 (25 bp)
CGTAATATAATTGAGCCGCAGCCAA
LOC_Os12g08130
Os.26802.1.S1_at--630--9751Chr12:4143640..4143664 (25 bp)
TAATATAATTGAGCCGCAGCCAAAA
LOC_Os12g08130
Target Sequence 
CAGTCTATGGACGTAGTACAGTAAAAAAGTGTGTACAACTGTNCAAGGGAGCAGTAGAATCCTTGCAGGGGTAAAATACT
GAGATGTAACTACTGAGCATTTTGTAGCGCTCAAACAGGTACAGAGGGGAAAAAAATTGANCCCNGATTGTATGGAGGTT
GGCGTAATATAATTGAGCCGCAGCCAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26802.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis