Browse Element(s) Details


OsAffx.31640.1.S1_at

Description tigr:9640.m00744
TID=OsAffx.31640.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0812011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g08080Os.41695.4.S1_x_at4/1112+4109141..4112917Transposable element protein, putative, MuDR
LOC_Os12g08080Os.41695.3.S1_x_at3/1112+4109141..4112917Transposable element protein, putative, MuDR
LOC_Os12g08080Os.41695.5.S1_x_at3/1112+4109141..4112917Transposable element protein, putative, MuDR
LOC_Os12g08080Os.41695.2.S1_x_at3/1112+4109141..4112917Transposable element protein, putative, MuDR
LOC_Os12g08090Os.26802.2.S1_at11/1112+4119914..4122046amino acid transporter, putative, expressed
LOC_Os12g08100Os.46306.1.S1_x_at3/1112+4126211..4129542transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g08110Os.45976.1.S1_x_at1/1112+4131874..4135599transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g08120OsAffx.31640.1.S1_at11/1112+4137588..4137797hypothetical protein
LOC_Os12g08130Os.26802.1.S1_at11/1112+4143608..4145607amino acid transporter, putative, expressed
LOC_Os12g08140Os.50327.1.S1_at11/1112+4162623..4166892pentatricopeptide, putative, expressed
LOC_Os12g08140OsAffx.11634.2.S1_x_at2/1112+4162623..4166892pentatricopeptide, putative, expressed
LOC_Os12g08140OsAffx.11634.1.S1_x_at2/1112+4162623..4166892pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31640.1.S1_at--550--5391Chr12:4137660..4137684 (25 bp)
GAAGCGGTGACAGACAGCGGGATTG
LOC_Os12g08120
OsAffx.31640.1.S1_at--669--2151Chr12:4137673..4137697 (25 bp)
ACAGCGGGATTGTAGTAGCGGTCAG
LOC_Os12g08120
OsAffx.31640.1.S1_at--173--10751Chr12:4137682..4137706 (25 bp)
TTGTAGTAGCGGTCAGGATGGGAAT
LOC_Os12g08120
OsAffx.31640.1.S1_at--728--8511Chr12:4137722..4137746 (25 bp)
TGAACCTAAACCATTTTACATGACC
LOC_Os12g08120
OsAffx.31640.1.S1_at--384--9811Chr12:4137728..4137752 (25 bp)
TAAACCATTTTACATGACCCCGCTG
LOC_Os12g08120
OsAffx.31640.1.S1_at--962--2351Chr12:4137729..4137753 (25 bp)
AAACCATTTTACATGACCCCGCTGA
LOC_Os12g08120
OsAffx.31640.1.S1_at--1027--2631Chr12:4137730..4137754 (25 bp)
AACCATTTTACATGACCCCGCTGAT
LOC_Os12g08120
OsAffx.31640.1.S1_at--238--3591Chr12:4137733..4137757 (25 bp)
CATTTTACATGACCCCGCTGATCCA
LOC_Os12g08120
OsAffx.31640.1.S1_at--836--9871Chr12:4137738..4137762 (25 bp)
TACATGACCCCGCTGATCCATGGTT
LOC_Os12g08120
OsAffx.31640.1.S1_at--549--671Chr12:4137741..4137765 (25 bp)
ATGACCCCGCTGATCCATGGTTCAA
LOC_Os12g08120
OsAffx.31640.1.S1_at--1162--5811Chr12:4137743..4137767 (25 bp)
GACCCCGCTGATCCATGGTTCAACA
LOC_Os12g08120
Target Sequence 
GAAGCGGTGACAGACAGCGGGATTGTAGTAGCGGTCAGGATGGGAATGGTTAGGTTCTGGATTGAACCTAAACCATTTTA
CATGACCCCGCTGATCCATGGTTCAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31640.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis