Browse Element(s) Details


Os.50327.1.S1_at

Description gb:AK120742.1
DB_XREF= gi:37990365
TID=Os.50327.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50327 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023004A10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023004A10, full insert sequence.
FL= gb:AK120742.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0814011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g08120OsAffx.31640.1.S1_at11/1112+4137588..4137797hypothetical protein
LOC_Os12g08130Os.26802.1.S1_at11/1112+4143608..4145607amino acid transporter, putative, expressed
LOC_Os12g08140Os.50327.1.S1_at11/1112+4162623..4166892pentatricopeptide, putative, expressed
LOC_Os12g08140OsAffx.11634.2.S1_x_at2/1112+4162623..4166892pentatricopeptide, putative, expressed
LOC_Os12g08140OsAffx.11634.1.S1_x_at2/1112+4162623..4166892pentatricopeptide, putative, expressed
LOC_Os12g08150OsAffx.7522.1.S1_at11/1112+4167848..4168426hypothetical protein
LOC_Os12g08160OsAffx.19549.1.S1_at11/1112+4169586..4170398hypothetical protein
LOC_Os12g08170Os.48783.1.S1_at11/1112+4170980..4175895dihydrolipoamide S-acetyltransferase, putative, expressed
LOC_Os12g08180Os.52520.1.S1_at11/1112+4177403..4181622Leucine Rich Repeat family protein, expressed
LOC_Os12g08189NANA12+4183418..4183749NA
LOC_Os12g08200Os.8575.1.S1_at11/1112+4188057..4188988expressed protein
LOC_Os12g08210OsAffx.31641.1.S1_at11/1112+4190540..4192666expressed protein
LOC_Os12g08210Os.49672.1.S1_x_at6/1112+4190540..4192666expressed protein
LOC_Os12g08210Os.49672.1.S1_at2/1112+4190540..4192666expressed protein
LOC_Os12g08210Os.5857.1.S1_at1/1112+4190540..4192666expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50327.1.S1_at--1010--2291Chr12:4166197..4166221 (25 bp)
AAATGTGCTGCAACTGCCGTTACTC
LOC_Os12g08140
Os.50327.1.S1_at--273--2551Chr12:4166208..4166232 (25 bp)
AACTGCCGTTACTCAAGTGTTTGAA
LOC_Os12g08140
Os.50327.1.S1_at--355--5351Chr12:4166230..4166254 (25 bp)
GAAGTTGCAGGTCAGATTCTAGGAT
LOC_Os12g08140
Os.50327.1.S1_at--1096--7471Chr12:4166265..4166289 (25 bp)
GTGGGCTTGGATACAGTGCTACACT
LOC_Os12g08140
Os.50327.1.S1_at--552--9651Chr12:4166471..4166495 (25 bp)
TCAGACTACGTTGAACAGCATGCAA
LOC_Os12g08140
Os.50327.1.S1_at--332--2231Chr12:4166567..4166591 (25 bp)
ACAATGTACTTTACTCCTAACCTCA
LOC_Os12g08140
Os.50327.1.S1_at--1084--10331Chr12:4166576..4166600 (25 bp)
TTTACTCCTAACCTCACACTAATGA
LOC_Os12g08140
Os.50327.1.S1_at--102--3631Chr12:4166656..4166680 (25 bp)
CTTGTTGGCTGTTGGAGAGGACTAC
LOC_Os12g08140
Os.50327.1.S1_at--394--6251Chr12:4166686..4166710 (25 bp)
GATGGATTGCTAGCATTCACCTTCA
LOC_Os12g08140
Os.50327.1.S1_at--312--1231Chr12:4166751..4166775 (25 bp)
AGTTCTTCTGTATTTTTATCTAGGG
LOC_Os12g08140
Os.50327.1.S1_at--961--7871Chr12:4166845..4166869 (25 bp)
GGTTTTAGGTTCCAATGCTCCATAA
LOC_Os12g08140
Target Sequence 
AAATGTGCTGCAACTGCCGTTACTCAAGTGTTTGAAGTTGCAGGTCAGATTCTAGGATATGTGTGGCTGTGGGCTTGGAT
ACAGTGCTACACTGCAATAAAATTCTTGCCGATGAGGATGAGAGTTAACCGGATAATACAGAAGCATGGTGATAATTACA
AGGTTCAGACTACGTTGAACAGCATGCAAAAGCTCTGGAAGAGATACATGTTGGTGACGAGAATATTGTAGCATCATACA
GACATCTGGAATTCAATTTTACAATGTACTTTACTCCTAACCTCACACTAATGAGGAAGAAATCGCTGACAAGAAATATG
TAAGCTAATTGTAAGTGTATAAAAATGGACTTGTTGGCTGTTGGAGAGGACTACAATCAGATGGATTGCTAGCATTCACC
TTCAATTTGGAACAAAATTAGGAAATACACACAAAAAAAGTCAAAGTTCTTCTGTATTTTTATCTAGGGATCTAATTGTG
GATTCAGCAAATTTAATTGTTATTACTCACATCTGATAACAGTGAAAAGCTTATGTGTGGTTTTAGGTTCCAATGCTCCA
TAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50327.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis