Browse Element(s) Details


Os.48783.1.S1_at

Description gb:AK099737.1
DB_XREF= gi:32984946
TID=Os.48783.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.48783 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013090I09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013090I09, full insert sequence.
FL= gb:AK099737.1 gb:AK069414.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0817011/11dihydrolipoamide S-acetyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g08140Os.50327.1.S1_at11/1112+4162623..4166892pentatricopeptide, putative, expressed
LOC_Os12g08140OsAffx.11634.2.S1_x_at2/1112+4162623..4166892pentatricopeptide, putative, expressed
LOC_Os12g08140OsAffx.11634.1.S1_x_at2/1112+4162623..4166892pentatricopeptide, putative, expressed
LOC_Os12g08150OsAffx.7522.1.S1_at11/1112+4167848..4168426hypothetical protein
LOC_Os12g08160OsAffx.19549.1.S1_at11/1112+4169586..4170398hypothetical protein
LOC_Os12g08170Os.48783.1.S1_at11/1112+4170980..4175895dihydrolipoamide S-acetyltransferase, putative, expressed
LOC_Os12g08180Os.52520.1.S1_at11/1112+4177403..4181622Leucine Rich Repeat family protein, expressed
LOC_Os12g08189NANA12+4183418..4183749NA
LOC_Os12g08200Os.8575.1.S1_at11/1112+4188057..4188988expressed protein
LOC_Os12g08210OsAffx.31641.1.S1_at11/1112+4190540..4192666expressed protein
LOC_Os12g08210Os.49672.1.S1_x_at6/1112+4190540..4192666expressed protein
LOC_Os12g08210Os.49672.1.S1_at2/1112+4190540..4192666expressed protein
LOC_Os12g08210Os.5857.1.S1_at1/1112+4190540..4192666expressed protein
LOC_Os12g08220Os.53427.1.S1_at11/1112+4192942..4197866Histone deacetylase family protein, expressed
LOC_Os12g08230OsAffx.31642.1.S1_s_at11/1112+4199548..4201861expressed protein
LOC_Os12g08230OsAffx.31642.1.S1_at11/1112+4199548..4201861expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0005739cellular_componentmitochondrion
GO:0004742molecular_functiondihydrolipoyllysine-residue acetyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48783.1.S1_at--885--4831Chr12:4174464..4174488 (25 bp)
GCTACAGCCCCATGAATACAATTCT
LOC_Os12g08170
Os.48783.1.S1_at--1086--9451Chr12:4171719..4171740 (22 bp)
TCTGGCACCTTTACTATTTCAAACC
LOC_Os12g08170
Os.48783.1.S1_at--1065--651Chr12:4171668..4171691 (24 bp)
ATGCAATCTTGCCACCTGGAACTGG
LOC_Os12g08170
Os.48783.1.S1_at--901--3071Chr12:4171549..4171573 (25 bp)
AATCATGGCCGTTGGATCATCACAA
LOC_Os12g08170
Os.48783.1.S1_at--138--2991Chr12:4171371..4171395 (25 bp)
AATGTTACTGCTGATCATCGGGTTA
LOC_Os12g08170
Os.48783.1.S1_at--404--9411Chr12:4171354..4171378 (25 bp)
TCGGGTTATTTACGGAGCTGATCTT
LOC_Os12g08170
Os.48783.1.S1_at--980--6811Chr12:4171254..4171278 (25 bp)
GTTTTTCCCTGAGGCAATTGCGATA
LOC_Os12g08170
Os.48783.1.S1_at--179--6491Chr12:4171233..4171257 (25 bp)
GATAGGATATGCTTCCCCGTAGATG
LOC_Os12g08170
Os.48783.1.S1_at--323--8351Chr12:4171135..4171159 (25 bp)
GGCTGGTTACCTTCTTATCATTGGT
LOC_Os12g08170
Os.48783.1.S1_at--684--6471Chr12:4171064..4171088 (25 bp)
GATACATATTGCCTTTCACCGGAAG
LOC_Os12g08170
Os.48783.1.S1_at--932--7971Chr12:4171004..4171028 (25 bp)
GGATCCATGCCCTGAATACAACGAA
LOC_Os12g08170
Target Sequence 
GCTACAGCCCCATGAATACAATTCTGGCACCTTTACTATTTCAAACCTTGGTATGTTTGGAGTTGACAGATTTGATGCAA
TCTTGCCACCTGGAACTGGTGCAATCATGGCCGTTGGATCATCACAACCAACACTNGTTGGTACAAAAGNTGGTAGTATT
GGGATCAAGAACCAAATGCAGGTCAATGTTACTGCTGATCATCGGGTTATTTACGGAGCTGATCTTGCCGCTTTTCTGCA
AACTCTTTCCAAGATAATTGAGGATCCCAAGGACCTTACATTTTAGACACATCCAGCAATTGTTTTTCCCTGAGGCAATT
GCGATAGGATATGCTTCCCCGTAGATGTGTAGCATGTGTTTCTGGTCATGTAAGTTAGTTGTTTAAGCTGTCACCTATGT
TGGTATGGGGTAACTTCACTGGCTGGTTACCTTCTTATCATTGGTTTGTTCAATAAGCTTTTACAATTTTATTGGGATAG
GGGCCGAGTATGATACATATTGCCTTTCACCGGAAGACTGATTTTTTATTTTGTCGAGCTCGATGTACAATGGATCCATG
CCCTGAATACAACGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48783.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis