Browse Element(s) Details


Os.53427.1.S1_at

Description gb:AK072557.1
DB_XREF= gi:32982580
TID=Os.53427.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53427 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023134F05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023134F05, full insert sequence.
FL= gb:AK072557.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0822011/11Histone deacetylase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g08150OsAffx.7522.1.S1_at11/1112+4167848..4168426hypothetical protein
LOC_Os12g08160OsAffx.19549.1.S1_at11/1112+4169586..4170398hypothetical protein
LOC_Os12g08170Os.48783.1.S1_at11/1112+4170980..4175895dihydrolipoamide S-acetyltransferase, putative, expressed
LOC_Os12g08180Os.52520.1.S1_at11/1112+4177403..4181622Leucine Rich Repeat family protein, expressed
LOC_Os12g08189NANA12+4183418..4183749NA
LOC_Os12g08200Os.8575.1.S1_at11/1112+4188057..4188988expressed protein
LOC_Os12g08210OsAffx.31641.1.S1_at11/1112+4190540..4192666expressed protein
LOC_Os12g08210Os.49672.1.S1_x_at6/1112+4190540..4192666expressed protein
LOC_Os12g08210Os.49672.1.S1_at2/1112+4190540..4192666expressed protein
LOC_Os12g08210Os.5857.1.S1_at1/1112+4190540..4192666expressed protein
LOC_Os12g08220Os.53427.1.S1_at11/1112+4192942..4197866Histone deacetylase family protein, expressed
LOC_Os12g08230OsAffx.31642.1.S1_s_at11/1112+4199548..4201861expressed protein
LOC_Os12g08230OsAffx.31642.1.S1_at11/1112+4199548..4201861expressed protein
LOC_Os12g08240Os.49351.2.S1_x_at1/1112+4202816..4205440hypothetical protein
LOC_Os12g08240OsAffx.18176.2.S1_at1/1112+4202816..4205440hypothetical protein
LOC_Os12g08240OsAffx.18176.1.S1_at1/1112+4202816..4205440hypothetical protein
LOC_Os12g08250OsAffx.28061.1.S1_at5/1112+4206341..4206757hypothetical protein
LOC_Os12g08260Os.17909.1.S1_a_at11/1112+4208150..42124412-oxoisovalerate dehydrogenase alpha subunit, mitochondrial precursor, putative, expressed
LOC_Os12g08270OsAffx.19550.1.S1_at11/1112+4212187..4215341expressed protein
LOC_Os12g08280Os.37640.1.S1_at11/1112+4215561..4218451expressed protein
LOC_Os12g08290OsAffx.19551.1.S1_x_at5/1112+4219666..4221297U-box domain-containing protein, putative, expressed
LOC_Os12g08290OsAffx.3968.1.S1_at2/1112+4219666..4221297U-box domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006338biological_processchromatin remodeling
GO:0016575biological_processhistone deacetylation
GO:0045604biological_processregulation of epidermal cell differentiation
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0004406molecular_functionH3/H4 histone acetyltransferase activity
GO:0004407molecular_functionhistone deacetylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53427.1.S1_at--69--9951Chr12:4197460..4197484 (25 bp)
TACGAGGAGCCCACGCGGAAGATCA
LOC_Os12g08220
Os.53427.1.S1_at--505--2671Chr12:4197524..4197548 (25 bp)
AAGCGCGGCGCCCAGAAGATTGCAA
LOC_Os12g08220
Os.53427.1.S1_at--448--1191Chr12:4197550..4197574 (25 bp)
AGTATCTATACTTGGCTGCTGAAAC
LOC_Os12g08220
Os.53427.1.S1_at--123--4731Chr12:4197586..4197610 (25 bp)
GCTGGTCAACAACTCAAGATCATAT
LOC_Os12g08220
Os.53427.1.S1_at--1023--7131Chr12:4197615..4197639 (25 bp)
GTCTTGTTAGCTTTTGCACTTTCCA
LOC_Os12g08220
Os.53427.1.S1_at--655--5111Chr12:4197630..4197654 (25 bp)
GCACTTTCCAGTGTAGCATTGTACA
LOC_Os12g08220
Os.53427.1.S1_at--64--1511Chr12:4197662..4197686 (25 bp)
AGCACGGCATAGTCATTTACATCTT
LOC_Os12g08220
Os.53427.1.S1_at--931--6471Chr12:4197702..4197726 (25 bp)
GATACATTCGATCGCAAGCTTGTCA
LOC_Os12g08220
Os.53427.1.S1_at--725--1971Chr12:4197765..4197789 (25 bp)
ACTGCGATTACTTGCATCTTTCTAC
LOC_Os12g08220
Os.53427.1.S1_at--117--10291Chr12:4197783..4197807 (25 bp)
TTTCTACTCCAGTTAGTGTCCAGTG
LOC_Os12g08220
Os.53427.1.S1_at--25--8191Chr12:4197807..4197831 (25 bp)
GGAACCTGTCGAGCTATCAGCATTT
LOC_Os12g08220
Target Sequence 
TACGAGGAGCCCACGCGGAAGATCAGGGAGGCCATCGACAAGGCCAAGCACCTCCACTCGCTCTAAGCGCGGCGCCCAGA
AGATTGCAACAGTATCTATACTTGGCTGCTGAAACTGCTTGCTGATGCTGGTCAACAACTCAAGATCATATTCATGTCTT
GTTAGCTTTTGCACTTTCCAGTGTAGCATTGTACATCGGAAAAGCACGGCATAGTCATTTACATCTTAGTTGCTGTGAAT
CAGATACATTCGATCGCAAGCTTGTCAATAGTTCAATACCAGTTGTGTAGATTAATACCAGTACTACTGCGATTACTTGC
ATCTTTCTACTCCAGTTAGTGTCCAGTGGAACCTGTCGAGCTATCAGCATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53427.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis