Browse Element(s) Details


Os.17909.1.S1_a_at

Description gb:AK064862.1
DB_XREF= gi:32974880
TID=Os.17909.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17909 (NCBI UniGene Cluster)
UG_TITLE=Branched chain alpha-keto acid dehydrogenase E1-alpha subunit mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000I03, full insert sequence.
FL= gb:AK064862.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0826011/112-oxoisovalerate dehydrogenase alpha subunit, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g08189NANA12+4183418..4183749NA
LOC_Os12g08200Os.8575.1.S1_at11/1112+4188057..4188988expressed protein
LOC_Os12g08210OsAffx.31641.1.S1_at11/1112+4190540..4192666expressed protein
LOC_Os12g08210Os.49672.1.S1_x_at6/1112+4190540..4192666expressed protein
LOC_Os12g08210Os.49672.1.S1_at2/1112+4190540..4192666expressed protein
LOC_Os12g08210Os.5857.1.S1_at1/1112+4190540..4192666expressed protein
LOC_Os12g08220Os.53427.1.S1_at11/1112+4192942..4197866Histone deacetylase family protein, expressed
LOC_Os12g08230OsAffx.31642.1.S1_s_at11/1112+4199548..4201861expressed protein
LOC_Os12g08230OsAffx.31642.1.S1_at11/1112+4199548..4201861expressed protein
LOC_Os12g08240Os.49351.2.S1_x_at1/1112+4202816..4205440hypothetical protein
LOC_Os12g08240OsAffx.18176.2.S1_at1/1112+4202816..4205440hypothetical protein
LOC_Os12g08240OsAffx.18176.1.S1_at1/1112+4202816..4205440hypothetical protein
LOC_Os12g08250OsAffx.28061.1.S1_at5/1112+4206341..4206757hypothetical protein
LOC_Os12g08260Os.17909.1.S1_a_at11/1112+4208150..42124412-oxoisovalerate dehydrogenase alpha subunit, mitochondrial precursor, putative, expressed
LOC_Os12g08270OsAffx.19550.1.S1_at11/1112+4212187..4215341expressed protein
LOC_Os12g08280Os.37640.1.S1_at11/1112+4215561..4218451expressed protein
LOC_Os12g08290OsAffx.19551.1.S1_x_at5/1112+4219666..4221297U-box domain-containing protein, putative, expressed
LOC_Os12g08290OsAffx.3968.1.S1_at2/1112+4219666..4221297U-box domain-containing protein, putative, expressed
LOC_Os12g08300OsAffx.31643.2.S1_at11/1112+4222873..4224915hypothetical protein
LOC_Os12g08300OsAffx.13450.1.S1_x_at1/1112+4222873..4224915hypothetical protein
LOC_Os12g08310OsAffx.19552.1.S1_at11/1112+4225302..4225670hypothetical protein
LOC_Os12g08320Os.46012.1.S1_at1/1112+4230247..4231580retrotransposon protein, putative, unclassified
LOC_Os12g08320OsAffx.28492.1.S1_at1/1112+4230247..4231580retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0005739cellular_componentmitochondrion
GO:0003863molecular_function3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity
GO:0004739molecular_functionpyruvate dehydrogenase (acetyl-transferring) activity
GO:0016624molecular_functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17909.1.S1_a_at--1011--831Chr12:4211264..4211288 (25 bp)
ATGGAGCTGTTATCCGTGGTCAAGC
LOC_Os12g08260
Os.17909.1.S1_a_at--1117--3231Chr12:4211284..4211308 (25 bp)
CAAGCTTATGGAATGCGCAGTATCA
LOC_Os12g08260
Os.17909.1.S1_a_at--827--5011Chr12:4211344..4211368 (25 bp)
GCAGTTCACACAGCCAGGGAAATGG
LOC_Os12g08260
Os.17909.1.S1_a_at--701--8431Chr12:4211488..4211512 (25 bp)
GGCCATCACTCGACATCCGATGATT
LOC_Os12g08260
Os.17909.1.S1_a_at--467--6291Chr12:4211506..4211530 (25 bp)
GATGATTCAACCAAATACAGGCCGG
LOC_Os12g08260
Os.17909.1.S1_a_at--573--3091Chr12:4211519..4211543 (25 bp)
AATACAGGCCGGTCGATGAGATCGA
LOC_Os12g08260
Os.17909.1.S1_a_at--1007--1631Chr12:4211556..4211580 (25 bp)
AGCGCGAGATCCGATTTCCAGGTAC
LOC_Os12g08260
Os.17909.1.S1_a_at--955--4791Chr12:4211787..4211811 (25 bp)
GCTCGCTGAACTATTCACCGATGTT
LOC_Os12g08260
Os.17909.1.S1_a_at--27--1231Chr12:4211820..4211844 (25 bp)
AGTTCCTTCCAACCTAAGAGAGCAA
LOC_Os12g08260
Os.17909.1.S1_a_at--815--6471Chr12:4211860..4211884 (25 bp)
GATACAATCAAGAAGCACCCTGCAG
LOC_Os12g08260
Os.17909.1.S1_a_at--110--5711Chr12:4211884..4211908 (25 bp)
GACTACCCAGCTGATGTGCATATTT
LOC_Os12g08260
Target Sequence 
ATGGAGCTGTTATCCGTGGTCAAGCTTATGGAATGCGCAGTATCAGAGTAGATGGAAATGATGCTCTTGCTGTGTACAGT
GCAGTTCACACAGCCAGGGAAATGGCTATCAAGGAAGGAAGGCCAATTTTAGTTGAGGCACTGACTTACCGGGTCGGCCA
TCACTCGACATCCGATGATTCAACCAAATACAGGCCGGTCGATGAGATCGAGCACTGGCGAACAGCGCGAGATCCGATTT
CCAGGTACAGAAAATGGGTTCAGGGGAATGGCTGGTGGTGTGATGAAGATGAATCTGAACTCAGGAACAATGTGAGGCAA
GAGCTTCTGAAAGCCATTCAGGTGGCAGAAAGAATGCCGAAACCGCCGCTCGCTGAACTATTCACCGATGTTTATGATGA
AGTTCCTTCCAACCTAAGAGAGCAAGAGCGATTGCTGAGGGATACAATCAAGAAGCACCCTGCAGACTACCCAGCTGATG
TGCATATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17909.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis