Browse Element(s) Details


OsAffx.19552.1.S1_at

Description tigr:9640.m00766
TID=OsAffx.19552.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0831011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g08230OsAffx.31642.1.S1_s_at11/1112+4199548..4201861expressed protein
LOC_Os12g08230OsAffx.31642.1.S1_at11/1112+4199548..4201861expressed protein
LOC_Os12g08240Os.49351.2.S1_x_at1/1112+4202816..4205440hypothetical protein
LOC_Os12g08240OsAffx.18176.2.S1_at1/1112+4202816..4205440hypothetical protein
LOC_Os12g08240OsAffx.18176.1.S1_at1/1112+4202816..4205440hypothetical protein
LOC_Os12g08250OsAffx.28061.1.S1_at5/1112+4206341..4206757hypothetical protein
LOC_Os12g08260Os.17909.1.S1_a_at11/1112+4208150..42124412-oxoisovalerate dehydrogenase alpha subunit, mitochondrial precursor, putative, expressed
LOC_Os12g08270OsAffx.19550.1.S1_at11/1112+4212187..4215341expressed protein
LOC_Os12g08280Os.37640.1.S1_at11/1112+4215561..4218451expressed protein
LOC_Os12g08290OsAffx.19551.1.S1_x_at5/1112+4219666..4221297U-box domain-containing protein, putative, expressed
LOC_Os12g08290OsAffx.3968.1.S1_at2/1112+4219666..4221297U-box domain-containing protein, putative, expressed
LOC_Os12g08300OsAffx.31643.2.S1_at11/1112+4222873..4224915hypothetical protein
LOC_Os12g08300OsAffx.13450.1.S1_x_at1/1112+4222873..4224915hypothetical protein
LOC_Os12g08310OsAffx.19552.1.S1_at11/1112+4225302..4225670hypothetical protein
LOC_Os12g08320Os.46012.1.S1_at1/1112+4230247..4231580retrotransposon protein, putative, unclassified
LOC_Os12g08320OsAffx.28492.1.S1_at1/1112+4230247..4231580retrotransposon protein, putative, unclassified
LOC_Os12g08330OsAffx.20517.2.S1_x_at1/1112+4241568..4245301retrotransposon protein, putative, unclassified
LOC_Os12g08330OsAffx.12243.1.S1_at1/1112+4241568..4245301retrotransposon protein, putative, unclassified
LOC_Os12g08340OsAffx.19553.1.S1_at11/1112+4245714..4246500hypothetical protein
LOC_Os12g08350OsAffx.31644.1.S1_at10/1112+4248171..4248985hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19552.1.S1_at--40--671Chr12:4225588..4225612 (25 bp)
ATGACCAGGGCCGTAGGGCATTCGC
LOC_Os12g08310
OsAffx.19552.1.S1_at--538--4931Chr12:4225571..4225595 (25 bp)
GCATTCGCCCTGGTGAATAACCTAG
LOC_Os12g08310
OsAffx.19552.1.S1_at--726--1871Chr12:4225541..4225565 (25 bp)
ACGAGAAGAGCCGTGCTGATCAGCA
LOC_Os12g08310
OsAffx.19552.1.S1_at--1113--1311Chr12:4225495..4225519 (25 bp)
AGATGGCTCCCTACGGCGATTGCGT
LOC_Os12g08310
OsAffx.19552.1.S1_at--373--8991Chr12:4225471..4225495 (25 bp)
TGAAGCTGTCGATGCTGTGGTCGCA
LOC_Os12g08310
OsAffx.19552.1.S1_at--205--9311Chr12:4225435..4225459 (25 bp)
TCCCCGGTGGGTACAGCGAAGTAAG
LOC_Os12g08310
OsAffx.19552.1.S1_at--1017--2811Chr12:4225417..4225441 (25 bp)
AAGTAAGGGTGCTCAGTGACCTCTC
LOC_Os12g08310
OsAffx.19552.1.S1_at--1095--9471Chr12:4225396..4225420 (25 bp)
TCTCCATGACTCTCAACGGCATCAA
LOC_Os12g08310
OsAffx.19552.1.S1_at--741--6491Chr12:4225369..4225393 (25 bp)
GATTTGTCAAGGAAGGCACGGTCGT
LOC_Os12g08310
OsAffx.19552.1.S1_at--356--931Chr12:4225356..4225380 (25 bp)
AGGCACGGTCGTGGGCATCTACAAT
LOC_Os12g08310
OsAffx.19552.1.S1_at--196--3031Chr12:4225334..4225358 (25 bp)
AATGCGGAGCCACACTCTATTCATG
LOC_Os12g08310
Target Sequence 
ATGACCAGGGCCGTAGGGCATTCGCCCTGGTGAATAACCTAGGCGGTACGAGAAGAGCCGTGCTGATCAGCACAAAGAAT
AATAGGCAGCTGGAGATGGCTCCCTACGGCGATTGCGTGAAGCTGTCGATGCTGTGGTCGCAGGGCGTGCAGCTCCCCGG
TGGGTACAGCGAAGTAAGGGTGCTCAGTGACCTCTCCATGACTCTCAACGGCATCAACGGATTTGTCAAGGAAGGCACGG
TCGTGGGCATCTACAATGCGGAGCCACACTCTATTCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19552.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis