Browse Element(s) Details


OsAffx.31642.1.S1_s_at

Description tigr:9640.m00755
TID=OsAffx.31642.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0823011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g08170Os.48783.1.S1_at11/1112+4170980..4175895dihydrolipoamide S-acetyltransferase, putative, expressed
LOC_Os12g08180Os.52520.1.S1_at11/1112+4177403..4181622Leucine Rich Repeat family protein, expressed
LOC_Os12g08189NANA12+4183418..4183749NA
LOC_Os12g08200Os.8575.1.S1_at11/1112+4188057..4188988expressed protein
LOC_Os12g08210OsAffx.31641.1.S1_at11/1112+4190540..4192666expressed protein
LOC_Os12g08210Os.49672.1.S1_x_at6/1112+4190540..4192666expressed protein
LOC_Os12g08210Os.49672.1.S1_at2/1112+4190540..4192666expressed protein
LOC_Os12g08210Os.5857.1.S1_at1/1112+4190540..4192666expressed protein
LOC_Os12g08220Os.53427.1.S1_at11/1112+4192942..4197866Histone deacetylase family protein, expressed
LOC_Os12g08230OsAffx.31642.1.S1_s_at11/1112+4199548..4201861expressed protein
LOC_Os12g08230OsAffx.31642.1.S1_at11/1112+4199548..4201861expressed protein
LOC_Os12g08240Os.49351.2.S1_x_at1/1112+4202816..4205440hypothetical protein
LOC_Os12g08240OsAffx.18176.2.S1_at1/1112+4202816..4205440hypothetical protein
LOC_Os12g08240OsAffx.18176.1.S1_at1/1112+4202816..4205440hypothetical protein
LOC_Os12g08250OsAffx.28061.1.S1_at5/1112+4206341..4206757hypothetical protein
LOC_Os12g08260Os.17909.1.S1_a_at11/1112+4208150..42124412-oxoisovalerate dehydrogenase alpha subunit, mitochondrial precursor, putative, expressed
LOC_Os12g08270OsAffx.19550.1.S1_at11/1112+4212187..4215341expressed protein
LOC_Os12g08280Os.37640.1.S1_at11/1112+4215561..4218451expressed protein
LOC_Os12g08290OsAffx.19551.1.S1_x_at5/1112+4219666..4221297U-box domain-containing protein, putative, expressed
LOC_Os12g08290OsAffx.3968.1.S1_at2/1112+4219666..4221297U-box domain-containing protein, putative, expressed
LOC_Os12g08300OsAffx.31643.2.S1_at11/1112+4222873..4224915hypothetical protein
LOC_Os12g08300OsAffx.13450.1.S1_x_at1/1112+4222873..4224915hypothetical protein
LOC_Os12g08310OsAffx.19552.1.S1_at11/1112+4225302..4225670hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31642.1.S1_s_at--307--10431Chr12:4201303..4201327 (25 bp)
TTAGGTTATGTCAGACCCAGAGCAG
LOC_Os12g08230
OsAffx.31642.1.S1_s_at--68--711Chr12:4201356..4201380 (25 bp)
ATGAGTAACTTGTGAGCTCTCGGTT
LOC_Os12g08230
OsAffx.31642.1.S1_s_at--396--2611Chr12:4201403..4201427 (25 bp)
AACCCGCCCTAAATCTTTGCAGGTG
LOC_Os12g08230
OsAffx.31642.1.S1_s_at--1133--9331Chr12:4201439..4201463 (25 bp)
TCGCGACTTGTTCATGGATTGATCA
LOC_Os12g08230
OsAffx.31642.1.S1_s_at--1133--251Chr12:4201474..4201498 (25 bp)
ATATGCAGATCATTCTTCAGTACCT
LOC_Os12g08230
OsAffx.31642.1.S1_s_at--1077--9751Chr12:4201521..4201545 (25 bp)
TAAGGCATTTGCTCCAAGACTTCTC
LOC_Os12g08230
OsAffx.31642.1.S1_s_at--282--1411Chr12:4201537..4201561 (25 bp)
AGACTTCTCTTCTGATCTTATCTCT
LOC_Os12g08230
OsAffx.31642.1.S1_s_at--1121--8671Chr12:4201589..4201613 (25 bp)
TGTGATTCACACGTACTTGTACTGT
LOC_Os12g08230
OsAffx.31642.1.S1_s_at--313--3751Chr12:4201736..4201760 (25 bp)
CTCTTCAATTCTGGGCAAAACGGGT
LOC_Os12g08230
OsAffx.31642.1.S1_s_at--855--5471Chr12:4201762..4201786 (25 bp)
GAACTTCCACCTACTTTGCTATGAT
LOC_Os12g08230
OsAffx.31642.1.S1_s_at--1024--2031Chr12:4201774..4201798 (25 bp)
ACTTTGCTATGATCCTGTCACTGTC
LOC_Os12g08230
Target Sequence 
TTAGGTTATGTCAGACCCAGAGCAGGAGAGGTTAACACTTCCACGGCACAATAATGAGTAACTTGTGAGCTCTCGGTTGG
TCAAGAACAGAAACCTTGTGAACCCGCCCTAAATCTTTGCAGGTGATCGTTGGCAATCGCGACTTGTTCATGGATTGATC
AGACATCATCTATATGCAGATCATTCTTCAGTACCTAAAAACTCATTGAATCCTACATTAAGGCATTTGCTCCAAGACTT
CTCTTCTGATCTTATCTCTTGAGAGGTTGTTAGAGGTTGTCTGGGATGTGATTCACACGTACTTGTACTGTGGATTGTCA
GGTACAAGTTGGACCAAACTGAAGCTCCAAAGATTTATGTTAGTGTAAGTACCATTCAGCGAGTACATGCATGTAACAGG
AATACAAAGTCATCGATACAATCCATTTGCAAGCTCTTCAATTCTGGGCAAAACGGGTGGAACTTCCACCTACTTTGCTA
TGATCCTGTCACTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31642.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis