Browse Element(s) Details


Os.49672.1.S1_at

Description gb:AK120295.1
DB_XREF= gi:37989918
TID=Os.49672.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49672 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013051E22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013051E22, full insert sequence.
FL= gb:AK120295.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g082102/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g08140Os.50327.1.S1_at11/1112+4162623..4166892pentatricopeptide, putative, expressed
LOC_Os12g08140OsAffx.11634.2.S1_x_at2/1112+4162623..4166892pentatricopeptide, putative, expressed
LOC_Os12g08140OsAffx.11634.1.S1_x_at2/1112+4162623..4166892pentatricopeptide, putative, expressed
LOC_Os12g08150OsAffx.7522.1.S1_at11/1112+4167848..4168426hypothetical protein
LOC_Os12g08160OsAffx.19549.1.S1_at11/1112+4169586..4170398hypothetical protein
LOC_Os12g08170Os.48783.1.S1_at11/1112+4170980..4175895dihydrolipoamide S-acetyltransferase, putative, expressed
LOC_Os12g08180Os.52520.1.S1_at11/1112+4177403..4181622Leucine Rich Repeat family protein, expressed
LOC_Os12g08189NANA12+4183418..4183749NA
LOC_Os12g08200Os.8575.1.S1_at11/1112+4188057..4188988expressed protein
LOC_Os12g08210OsAffx.31641.1.S1_at11/1112+4190540..4192666expressed protein
LOC_Os12g08210Os.49672.1.S1_x_at6/1112+4190540..4192666expressed protein
LOC_Os12g08210Os.49672.1.S1_at2/1112+4190540..4192666expressed protein
LOC_Os12g08210Os.5857.1.S1_at1/1112+4190540..4192666expressed protein
LOC_Os12g08220Os.53427.1.S1_at11/1112+4192942..4197866Histone deacetylase family protein, expressed
LOC_Os12g08230OsAffx.31642.1.S1_s_at11/1112+4199548..4201861expressed protein
LOC_Os12g08230OsAffx.31642.1.S1_at11/1112+4199548..4201861expressed protein
LOC_Os12g08240Os.49351.2.S1_x_at1/1112+4202816..4205440hypothetical protein
LOC_Os12g08240OsAffx.18176.2.S1_at1/1112+4202816..4205440hypothetical protein
LOC_Os12g08240OsAffx.18176.1.S1_at1/1112+4202816..4205440hypothetical protein
LOC_Os12g08250OsAffx.28061.1.S1_at5/1112+4206341..4206757hypothetical protein
LOC_Os12g08260Os.17909.1.S1_a_at11/1112+4208150..42124412-oxoisovalerate dehydrogenase alpha subunit, mitochondrial precursor, putative, expressed
LOC_Os12g08270OsAffx.19550.1.S1_at11/1112+4212187..4215341expressed protein
LOC_Os12g08280Os.37640.1.S1_at11/1112+4215561..4218451expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49672.1.S1_at--383--2512Chr07:20408273..20408324 (24 bp)
AACATTTCCAAGTGATGAAACAATA
NONE
Os.49672.1.S1_at--483--9211Chr12:4191150..4191174 (25 bp)
TCCAAGTGATGAAACAATACAGACA
LOC_Os12g08210
Os.49672.1.S1_at--1018--10351Chr12:4190376..4190400 (25 bp)
TTTTTCAGTGCGCTGTTTTTTATCC
NONE
Os.49672.1.S1_at--861--10531Chr12:4190373..4190397 (25 bp)
TTCAGTGCGCTGTTTTTTATCCTTA
NONE
Os.49672.1.S1_at--171--9651Chr12:4190372..4190396 (25 bp)
TCAGTGCGCTGTTTTTTATCCTTAC
NONE
Os.49672.1.S1_at--709--1131Chr12:4190370..4190394 (25 bp)
AGTGCGCTGTTTTTTATCCTTACAA
NONE
Os.49672.1.S1_at--1021--7291Chr12:4190369..4190393 (25 bp)
GTGCGCTGTTTTTTATCCTTACAAT
NONE
Os.49672.1.S1_at--1004--9151Chr12:4190368..4190392 (25 bp)
TGCGCTGTTTTTTATCCTTACAATA
NONE
Os.49672.1.S1_at--8--4731Chr12:4190365..4190389 (25 bp)
GCTGTTTTTTATCCTTACAATATCT
NONE
Os.49672.1.S1_at--479--10351Chr12:4190358..4190382 (25 bp)
TTTATCCTTACAATATCTTCTACAG
NONE
Os.49672.1.S1_at--448--10132Chr03:19139845..19139874 (24 bp)
TATCTTCTACAGTAATAAAGTTAAG
NONE
Target Sequence 
AACATTTCCAAGTGATGAAACAATACAGACATGTTTCTCTGCAGCTNGTCAAATAAAAGTTCTTTTAGGTTTGCTTAGGA
TTNGAGAGTGATNACCGNGTTTCTTATGCATCATGATGACTCAGGGGGAAGTAACAAACCCGTCCTCAGNCTGAAGAAGA
TGAATGGTGTTCTTATGGCTGAGTTGTTTTGTGCTTAATCGGTCNACAGATANACGCTACTTTAAGATAGATACCNGTAN
CCCTAATTNCTTGTATATGTGGTGCCCTTCATACTANNTGNTCTTGNAGACNTGTNATCTCATGTTCCCTTCAAAGTATA
ATAAGTGTTCANCTGGAANTTCATTAATGCACATTATGATGGTGTNAGTTTTTTCAGTGCGCTGTTTTTTATCCTTACAA
TATCTTCTACAGTAATAAAGTTAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49672.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis