Browse Element(s) Details


OsAffx.19550.1.S1_at

Description tigr:9640.m00762
TID=OsAffx.19550.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=3(2),5-bisphosphate nucleotidase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0827011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g08200Os.8575.1.S1_at11/1112+4188057..4188988expressed protein
LOC_Os12g08210OsAffx.31641.1.S1_at11/1112+4190540..4192666expressed protein
LOC_Os12g08210Os.49672.1.S1_x_at6/1112+4190540..4192666expressed protein
LOC_Os12g08210Os.49672.1.S1_at2/1112+4190540..4192666expressed protein
LOC_Os12g08210Os.5857.1.S1_at1/1112+4190540..4192666expressed protein
LOC_Os12g08220Os.53427.1.S1_at11/1112+4192942..4197866Histone deacetylase family protein, expressed
LOC_Os12g08230OsAffx.31642.1.S1_s_at11/1112+4199548..4201861expressed protein
LOC_Os12g08230OsAffx.31642.1.S1_at11/1112+4199548..4201861expressed protein
LOC_Os12g08240Os.49351.2.S1_x_at1/1112+4202816..4205440hypothetical protein
LOC_Os12g08240OsAffx.18176.2.S1_at1/1112+4202816..4205440hypothetical protein
LOC_Os12g08240OsAffx.18176.1.S1_at1/1112+4202816..4205440hypothetical protein
LOC_Os12g08250OsAffx.28061.1.S1_at5/1112+4206341..4206757hypothetical protein
LOC_Os12g08260Os.17909.1.S1_a_at11/1112+4208150..42124412-oxoisovalerate dehydrogenase alpha subunit, mitochondrial precursor, putative, expressed
LOC_Os12g08270OsAffx.19550.1.S1_at11/1112+4212187..4215341expressed protein
LOC_Os12g08280Os.37640.1.S1_at11/1112+4215561..4218451expressed protein
LOC_Os12g08290OsAffx.19551.1.S1_x_at5/1112+4219666..4221297U-box domain-containing protein, putative, expressed
LOC_Os12g08290OsAffx.3968.1.S1_at2/1112+4219666..4221297U-box domain-containing protein, putative, expressed
LOC_Os12g08300OsAffx.31643.2.S1_at11/1112+4222873..4224915hypothetical protein
LOC_Os12g08300OsAffx.13450.1.S1_x_at1/1112+4222873..4224915hypothetical protein
LOC_Os12g08310OsAffx.19552.1.S1_at11/1112+4225302..4225670hypothetical protein
LOC_Os12g08320Os.46012.1.S1_at1/1112+4230247..4231580retrotransposon protein, putative, unclassified
LOC_Os12g08320OsAffx.28492.1.S1_at1/1112+4230247..4231580retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006790biological_processsulfur metabolism
GO:0009409biological_processresponse to cold
GO:0009628biological_processresponse to abiotic stimulus
GO:0009738biological_processabscisic acid mediated signaling
GO:0009968biological_processnegative regulation of signal transduction
GO:0016481biological_processnegative regulation of transcription
GO:0048015biological_processphosphoinositide-mediated signaling
GO:0004437molecular_functioninositol or phosphatidylinositol phosphatase activity
GO:0008441molecular_function3'(2'),5'-bisphosphate nucleotidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19550.1.S1_at--399--3171Chr12:4213057..4213081 (25 bp)
AATTGGACTTGCATTACTGGACGAA
LOC_Os12g08270
OsAffx.19550.1.S1_at--434--3191Chr12:4213013..4213037 (25 bp)
CAATGGCATGCCCAAATCTTCCTTT
LOC_Os12g08270
OsAffx.19550.1.S1_at--942--4291Chr12:4212940..4212964 (25 bp)
CCTCTTTTCTGCTACAATTGGCTGT
LOC_Os12g08270
OsAffx.19550.1.S1_at--1136--6091Chr12:4212903..4212927 (25 bp)
GAGTCCTTAGAAGGCTCTCAGCCAC
LOC_Os12g08270
OsAffx.19550.1.S1_at--531--7451Chr12:4212764..4212788 (25 bp)
GTGTCTGTTCTATCAGCAATCCAGT
LOC_Os12g08270
OsAffx.19550.1.S1_at--1110--7971Chr12:4212739..4212763 (25 bp)
GGATGCCTCATTCTTTGAATCTTAT
LOC_Os12g08270
OsAffx.19550.1.S1_at--829--2471Chr12:4212707..4212731 (25 bp)
AACACTGCATGCGTGATTGCACTTC
LOC_Os12g08270
OsAffx.19550.1.S1_at--148--71Chr12:4212694..4212716 (23 bp)
ATTGCACTTCCTCCATTGCAGAGAA
LOC_Os12g08270
OsAffx.19550.1.S1_at--1006--3971Chr12:4212499..4212523 (25 bp)
CGATTTCCACACAAACGTTCCAAAG
LOC_Os12g08270
OsAffx.19550.1.S1_at--568--631Chr12:4212459..4212483 (25 bp)
ATGCAGCTGGGTCTATTATTGTCAC
LOC_Os12g08270
OsAffx.19550.1.S1_at--637--6491Chr12:4212269..4212293 (25 bp)
GATATCTTGATCGTGATGCTGGCAT
LOC_Os12g08270
Target Sequence 
AATTGGACTTGCATTACTGGACGAAGGCAAAGTAGTTTTGGGAGCAATGGCATGCCCAAATCTTCCTTTCAAATCAATAG
ATCACAATGGTGGATCTTCGGGAGATCAAGTTGGTGCCCTCTTTTCTGCTACAATTGGCTGTGGATCTACAGTTGAGTCC
TTAGAAGGCTCTCAGCCACAAAAGATCAGTGTCTGTTCTATCAGCAATCCAGTGGATGCCTCATTCTTTGAATCTTATGA
AAGAAAACACTGCATGCGTGATTGCACTTCCTCCATTGCAGAGAAACTTGGTATTCAAGCTCCTCCAGTTAGAATTGATA
GCCAAGCAAAATATGGTGCTGTAGCCCAAGGTGATGGCGCCATTTATTGGCGATTTCCACACAAACGTTCCAAAGAAGCA
GTATGGGATCATGCAGCTGGGTCTATTATTGTCACAGAAGCTGGAGGTTTGGTAAAAGATGCTTCAGGAAACGATTTGGA
TTTCTCCAAAGGTAGATATCTTGATCGTGATGCTGGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19550.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis