Browse Element(s) Details


OsAffx.19549.1.S1_at

Description tigr:9640.m00748
TID=OsAffx.19549.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0816011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g08130Os.26802.1.S1_at11/1112+4143608..4145607amino acid transporter, putative, expressed
LOC_Os12g08140Os.50327.1.S1_at11/1112+4162623..4166892pentatricopeptide, putative, expressed
LOC_Os12g08140OsAffx.11634.2.S1_x_at2/1112+4162623..4166892pentatricopeptide, putative, expressed
LOC_Os12g08140OsAffx.11634.1.S1_x_at2/1112+4162623..4166892pentatricopeptide, putative, expressed
LOC_Os12g08150OsAffx.7522.1.S1_at11/1112+4167848..4168426hypothetical protein
LOC_Os12g08160OsAffx.19549.1.S1_at11/1112+4169586..4170398hypothetical protein
LOC_Os12g08170Os.48783.1.S1_at11/1112+4170980..4175895dihydrolipoamide S-acetyltransferase, putative, expressed
LOC_Os12g08180Os.52520.1.S1_at11/1112+4177403..4181622Leucine Rich Repeat family protein, expressed
LOC_Os12g08189NANA12+4183418..4183749NA
LOC_Os12g08200Os.8575.1.S1_at11/1112+4188057..4188988expressed protein
LOC_Os12g08210OsAffx.31641.1.S1_at11/1112+4190540..4192666expressed protein
LOC_Os12g08210Os.49672.1.S1_x_at6/1112+4190540..4192666expressed protein
LOC_Os12g08210Os.49672.1.S1_at2/1112+4190540..4192666expressed protein
LOC_Os12g08210Os.5857.1.S1_at1/1112+4190540..4192666expressed protein
LOC_Os12g08220Os.53427.1.S1_at11/1112+4192942..4197866Histone deacetylase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19549.1.S1_at--997--8031Chr12:4170137..4170161 (25 bp)
GGAGATGGTGTCAGGGTTTCTAACC
LOC_Os12g08160
OsAffx.19549.1.S1_at--271--7751Chr12:4170131..4170155 (25 bp)
GGTGTCAGGGTTTCTAACCACTCGA
LOC_Os12g08160
OsAffx.19549.1.S1_at--483--6511Chr12:4170122..4170146 (25 bp)
GTTTCTAACCACTCGAAGCCGAACG
LOC_Os12g08160
OsAffx.19549.1.S1_at--914--5411Chr12:4170108..4170132 (25 bp)
GAAGCCGAACGCCATTGGTGTCAAT
LOC_Os12g08160
OsAffx.19549.1.S1_at--576--8611Chr12:4170093..4170117 (25 bp)
TGGTGTCAATGCCAAGCTTCCAGTG
LOC_Os12g08160
OsAffx.19549.1.S1_at--338--591Chr12:4170085..4170109 (25 bp)
ATGCCAAGCTTCCAGTGGCGTCGGA
LOC_Os12g08160
OsAffx.19549.1.S1_at--1127--4911Chr12:4170078..4170102 (25 bp)
GCTTCCAGTGGCGTCGGATGCTACG
LOC_Os12g08160
OsAffx.19549.1.S1_at--528--4471Chr12:4170051..4170075 (25 bp)
GCCGGCGATGTACTTGGTCCCGTCA
LOC_Os12g08160
OsAffx.19549.1.S1_at--1125--6251Chr12:4170045..4170069 (25 bp)
GATGTACTTGGTCCCGTCATCCTCG
LOC_Os12g08160
OsAffx.19549.1.S1_at--567--2691Chr12:4169807..4169831 (25 bp)
AAGCTCGCGCACATGGAGGCCGACA
LOC_Os12g08160
OsAffx.19549.1.S1_at--284--3951Chr12:4169645..4169669 (25 bp)
CGGCAGCCGCTGGGAGAGCTTCTCA
LOC_Os12g08160
Target Sequence 
GGAGATGGTGTCAGGGTTTCTAACCACTCGAAGCCGAACGCCATTGGTGTCAATGCCAAGCTTCCAGTGGCGTCGGATGC
TACGCCGCCGGCGATGTACTTGGTCCCGTCATCCTCGCCGCCGTTCTTCGCGTCGTCGCCGTCGCTCGCCAACGACGACG
ACGGCGTCTCCGCCGCCTCCGCCAGCGACGCCATGGTGATGGGCTCCATCAGGAAGGTGGAGGAGGAGGCCGCCAGGGCG
AGGCAGGAGGTGGTGCAGCTGAAGCGGAGGCTGGCCGAGACGGAGCTCGCCATGGCCACGCTCAGCGCGAAGCTCCACCG
CGCGCTCTCCAAGCTCGCGCACATGGAGGCCGACAGGGCGGCGGCGGAGCGCGCGCGCATCCAGCGCAGGGACGGCCGCG
ACATGGCGCTGGCTGTCTGGGCCGCGTCCGGCGGCGGCGACCGGCGCCGCGGCGTCGCCACCGCGGCCGCCCACGCGGCG
GCGACGGCGAGGCGGCAGCCGCTGGGAGAGCTTCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19549.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis