Browse Element(s) Details


Os.26809.1.S1_at

Description gb:AK111550.1
DB_XREF= gi:37988213
TID=Os.26809.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26809 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013058C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013058C07, full insert sequence.
FL= gb:AK111550.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3570011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g35660Os.49408.1.S1_at9/117+21357959..21364861Protein kinase domain containing protein, expressed
LOC_Os07g35660Os.10719.1.S1_at1/117+21357959..21364861Protein kinase domain containing protein, expressed
LOC_Os07g35670OsAffx.5537.1.S1_at11/117+21365818..21366225hypothetical protein
LOC_Os07g35680Os.22699.1.S1_at2/117+21366421..21372956Protein kinase domain containing protein, expressed
LOC_Os07g35680Os.49408.1.S1_at2/117+21366421..21372956Protein kinase domain containing protein, expressed
LOC_Os07g35690Os.49803.1.S1_at11/117+21376396..21379535Protein kinase domain containing protein, expressed
LOC_Os07g35690Os.54931.1.S2_at1/117+21376396..21379535Protein kinase domain containing protein, expressed
LOC_Os07g35700Os.26809.1.S1_at11/117+21383073..21386575Protein kinase domain containing protein, expressed
LOC_Os07g35710NANA7+21387295..21388583SWIM zinc finger family protein
LOC_Os07g35720Os.15770.2.S1_at11/117+21389781..21391866expressed protein
LOC_Os07g35720Os.15770.1.S1_x_at11/117+21389781..21391866expressed protein
LOC_Os07g35730Os.54419.1.A1_x_at11/117+21393519..21395010Protein kinase domain containing protein, expressed
LOC_Os07g35740Os.54268.1.S1_at11/117+21406248..21409993Protein kinase domain containing protein, expressed
LOC_Os07g35750Os.27185.1.S1_x_at11/117+21410931..21417602Protein kinase domain containing protein, expressed
LOC_Os07g35750OsAffx.5539.1.S1_x_at11/117+21410931..21417602Protein kinase domain containing protein, expressed
LOC_Os07g35750Os.46481.2.S1_x_at1/117+21410931..21417602Protein kinase domain containing protein, expressed
LOC_Os07g35750OsAffx.28164.2.S1_at1/117+21410931..21417602Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26809.1.S1_at--342--6471Chr07:21383568..21383592 (25 bp)
GATAAGGTGCTGAAGTGCATCCACA
LOC_Os07g35700
Os.26809.1.S1_at--519--7111Chr07:21383497..21383521 (25 bp)
GTCAGCTGTTAATGCCATGCTTAGT
LOC_Os07g35700
Os.26809.1.S1_at--555--1191Chr07:21383475..21383499 (25 bp)
AGTAGTACTGGTACAGTCCGTCTCC
LOC_Os07g35700
Os.26809.1.S1_at--752--3491Chr07:21383440..21383464 (25 bp)
CAGGCCTTCATTTTGGGTCCAGGAG
LOC_Os07g35700
Os.26809.1.S1_at--942--7311Chr07:21383411..21383435 (25 bp)
GTGCTACTGCTAGCTAAGGTGCAAA
LOC_Os07g35700
Os.26809.1.S1_at--220--3011Chr07:21383346..21383370 (25 bp)
AATGAAGCGCCGATCACAGAACTTG
LOC_Os07g35700
Os.26809.1.S1_at--884--5931Chr07:21383298..21383322 (25 bp)
GAGAATTGAAAGAACCTCGGCCTCC
LOC_Os07g35700
Os.26809.1.S1_at--29--3751Chr07:21383274..21383298 (25 bp)
CTCTTCCTTGCATTTACCGGGAATT
LOC_Os07g35700
Os.26809.1.S1_at--942--131Chr07:21383234..21383258 (25 bp)
ATTAAGCTGCGCTAGCTAGGTACCG
LOC_Os07g35700
Os.26809.1.S1_at--368--3711Chr07:21383219..21383243 (25 bp)
CTAGGTACCGAGTTTTTGGCTCAAT
LOC_Os07g35700
Os.26809.1.S1_at--38--6871Chr07:21383122..21383146 (25 bp)
GTTTGTACTGTTGCACACTGATACT
LOC_Os07g35700
Target Sequence 
GATAAGGTGCTGAAGTGCATCCACATTGGGCTACTCTGTGTTCAACCGAAACCTGCTGATAGGCCATTGATGTCAGCTGT
TAATGCCATGCTTAGTAGTACTGGTACAGTCCGTCTCCCATGCTTGTCCAGGCCTTCATTTTGGGTCCAGGAGATTGGTG
CTACTGCTAGCTAAGGTGCAAATTCAGAGCAGAACCCACACAACTCAAGAAAAATGTCGCAAAATGAAGCGCCGATCACA
GAACTTGAGCCCAGATGAGTATTGTAGGATGAGAATTGAAAGAACCTCGGCCTCCTCTTCCTTGCATTTACCGGGAATTG
TACAACAAACTCTTATTAAGCTGCGCTAGCTAGGTACCGAGTTTTTGGCTCAATAAAATCAATTTGAAATTGTTAGAGCT
TAATAATATCTNCTGTNNTCAGCCTGTTTAAATCAACGGAAGTCATGTTTGTACTGTTGCACACTGATACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26809.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis