Browse Element(s) Details


Os.26817.1.S1_at

Description gb:AK068343.1
DB_XREF= gi:32978361
TID=Os.26817.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.26817 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative monosaccharide transporter (OSJNBa0042H09.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013148F21, full insert sequence.
FL= gb:AK068343.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4119011/11Hexose carrier protein HEX6, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g41130OsAffx.18596.1.S1_at11/1110+21769936..21770869AP2 domain containing protein, expressed
LOC_Os10g41130OsAffx.18596.1.S1_x_at11/1110+21769936..21770869AP2 domain containing protein, expressed
LOC_Os10g41150Os.19725.1.S1_x_at10/1110+21775681..21779426aminotransferase, classes I and II family protein, expressed
LOC_Os10g41150Os.14940.1.S1_at9/1110+21775681..21779426aminotransferase, classes I and II family protein, expressed
LOC_Os10g41150Os.25227.1.S1_x_at1/1110+21775681..21779426aminotransferase, classes I and II family protein, expressed
LOC_Os10g41160Os.16083.1.S1_at11/1110+21782610..21784063expressed protein
LOC_Os10g41170Os.57082.1.S1_at11/1110+21787466..21790532oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os10g41180Os.46183.1.S1_at10/1110+21792111..21794280expressed protein
LOC_Os10g41190Os.26817.1.S1_at11/1110+21794588..21798099Hexose carrier protein HEX6, putative, expressed
LOC_Os10g41200Os.9166.1.S1_a_at11/1110+21798750..21801974ZmMybst1, putative, expressed
LOC_Os10g41210Os.9166.4.S1_x_at10/1110+21803800..21807068NA
LOC_Os10g41220Os.46463.1.S1_at11/1110+21807268..21812044U-box domain containing protein, expressed
LOC_Os10g41230Os.4605.1.S1_at11/1110+21822961..21824470HD-ZIP protein N terminus containing protein, expressed
LOC_Os10g41230Os.23043.1.A1_x_at2/1110+21822961..21824470HD-ZIP protein N terminus containing protein, expressed
LOC_Os10g41230Os.49759.1.S1_x_at1/1110+21822961..21824470HD-ZIP protein N terminus containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015770biological_processsucrose transport
GO:0005887cellular_componentintegral to plasma membrane
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0008506molecular_functionsucrose:hydrogen symporter activity
GO:0015144molecular_functioncarbohydrate transporter activity
GO:0015145molecular_functionmonosaccharide transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26817.1.S1_at--225--10271Chr10:21797515..21797539 (25 bp)
TTTGTTGCTGGCTTTGCATGGTCAT
LOC_Os10g41190
Os.26817.1.S1_at--1--7571Chr10:21797542..21797566 (25 bp)
GGGCCATTGACATTCTTGGTCCCAA
LOC_Os10g41190
Os.26817.1.S1_at--379--7791Chr10:21797559..21797583 (25 bp)
GGTCCCAACTGAGATATGTCCACTT
LOC_Os10g41190
Os.26817.1.S1_at--393--6871Chr10:21797606..21797630 (25 bp)
GTATTGTTGTTGCAGTGGTCTTCCT
LOC_Os10g41190
Os.26817.1.S1_at--321--1411Chr10:21797651..21797675 (25 bp)
AGACATTCCTTGCAGTTCTATGCCG
LOC_Os10g41190
Os.26817.1.S1_at--638--10551Chr10:21797666..21797690 (25 bp)
TTCTATGCCGCATCAAGTCAGGGAC
LOC_Os10g41190
Os.26817.1.S1_at--509--1111Chr10:21797727..21797751 (25 bp)
AGTGTTTGTTTATTTCTTCCTGCCG
LOC_Os10g41190
Os.26817.1.S1_at--231--9191Chr10:21797747..21797771 (25 bp)
TGCCGGAGACAAAGAAGCTGCCCAT
LOC_Os10g41190
Os.26817.1.S1_at--1117--9491Chr10:21797859..21797883 (25 bp)
TCTCCCTAGCATGTAAAGCCCTATG
LOC_Os10g41190
Os.26817.1.S1_at--212--4251Chr10:21797995..21798019 (25 bp)
CCGTGACTGGCTCTTTCAGATGGTA
LOC_Os10g41190
Os.26817.1.S1_at--982--9191Chr10:21798057..21798081 (25 bp)
TGCCATTTTGTTTCTGATTCCAGAT
LOC_Os10g41190
Target Sequence 
TTTGTTGCTGGCTTTGCATGGTCATGGGGGCCATTGACATTCTTGGTCCCAACTGAGATATGTCCACTTGAGATCAGATC
AGCAGGGCAGAGTATTGTTGTTGCAGTGGTCTTCCTGATGACATTTGTGATTGGACAGACATTCCTTGCAGTTCTATGCC
GCATCAAGTCAGGGACATTCTTCTTCTTTGCAGGATGGATCTGCTTGATGACAGTGTTTGTTTATTTCTTCCTGCCGGAG
ACAAAGAAGCTGCCCATGGAGCAGATGGAGCAGGTCTGGAGGAAGCATTGGTTCTGGAAGAAGATTGTAGGGGAGGAGGA
GGAAAAACAAGCAGAGAAAACAGCTCTCCCTAGCATGTAAAGCCCTATGAATTGGAATGTATTTGACCATACAAAAACCA
TACAAAGTGTAGGGTTCTAATTAGCAAATGTAAGTTTGTAATTCTTCTGTCTAAATGTAGTGTGTTGAGGTGGTCAGTTG
CCGTGACTGGCTCTTTCAGATGGTAATTACAAAGAAATGTAACATTAATGTTGTAACAAGGGNTGCCATTTTGTTTCTGA
TTCCAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26817.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis