Browse Element(s) Details


Os.26866.1.S1_at

Description gb:AK070101.1
DB_XREF= gi:32980125
TID=Os.26866.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.26866 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023044I16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023044I16, full insert sequence.
FL= gb:AK070101.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4370011/11amino acid transporter family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g43670OsAffx.28086.1.S1_at11/116+26278807..26291348Leucine Rich Repeat family protein, expressed
LOC_Os06g43670Os.16349.1.S1_at1/116+26278807..26291348Leucine Rich Repeat family protein, expressed
LOC_Os06g43680Os.57572.1.S1_at11/116+26295682..26302262ankryin repeat S-palmitoyl transferase, putative, expressed
LOC_Os06g43680Os.53850.1.S1_at1/116+26295682..26302262ankryin repeat S-palmitoyl transferase, putative, expressed
LOC_Os06g43690OsAffx.15912.1.S1_at11/116+26302932..26310858Utp21 specific WD40 associated domain containing protein, expressed
LOC_Os06g43700Os.26866.1.S1_at11/116+26311769..26314024amino acid transporter family protein, putative, expressed
LOC_Os06g43710Os.27248.1.S1_a_at11/116+26315311..26317957Protein OS-9 precursor, putative, expressed
LOC_Os06g43720NANA6+26318548..26319186hypothetical protein
LOC_Os06g43730OsAffx.28087.1.S1_at11/116+26320260..26320562hypothetical protein
LOC_Os06g43740OsAffx.28088.1.S1_at11/116+26321831..26323096F-box domain containing protein
LOC_Os06g43750OsAffx.15913.1.S1_at11/116+26325170..26328347hypothetical protein
LOC_Os06g43760Os.8879.1.S1_at6/116+26331273..26343999isoleucyl-tRNA synthetase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006865biological_processamino acid transport
GO:0016020cellular_componentmembrane
GO:0005279molecular_functionamino acid-polyamine transporter activity
GO:0015359molecular_functionamino acid permease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26866.1.S1_at--761--2431Chr06:26312344..26312368 (25 bp)
AAAAGATGCTCACCTTGACAGTGGT
LOC_Os06g43700
Os.26866.1.S1_at--977--10751Chr06:26312330..26312354 (25 bp)
TTGACAGTGGTGCTCTTGGCACTCA
LOC_Os06g43700
Os.26866.1.S1_at--810--4191Chr06:26312217..26312241 (25 bp)
CCCGGCCCTTATTGCATTGAGATTG
LOC_Os06g43700
Os.26866.1.S1_at--550--6211Chr06:26312160..26312184 (25 bp)
GAGGCTCCTGTCAATTGTGATGCTT
LOC_Os06g43700
Os.26866.1.S1_at--391--3111Chr06:26312048..26312072 (25 bp)
AATTTAGTAGGGTTAGTGCATTGCC
LOC_Os06g43700
Os.26866.1.S1_at--872--7311Chr06:26312033..26312057 (25 bp)
GTGCATTGCCATGGCAGTCATACAG
LOC_Os06g43700
Os.26866.1.S1_at--850--9051Chr06:26311925..26311949 (25 bp)
TGCAGGAGCATTTCTTGAAGGTTTT
LOC_Os06g43700
Os.26866.1.S1_at--258--5931Chr06:26311891..26311915 (25 bp)
GAGCTTGGACTAGATTGACAGATTC
LOC_Os06g43700
Os.26866.1.S1_at--756--9051Chr06:26311855..26311879 (25 bp)
TGCATTTATTGGTAAGGCAGCACAA
LOC_Os06g43700
Os.26866.1.S1_at--252--1451Chr06:26311823..26311847 (25 bp)
AGAAGCTGGTTGTGTTGTACTGCGA
LOC_Os06g43700
Os.26866.1.S1_at--354--7011Chr06:26311807..26311831 (25 bp)
GTACTGCGAGGTTGTTGCCTGTCTA
LOC_Os06g43700
Target Sequence 
AAAAGATGCTCACCTTGACAGTGGTGCTCTTGGCACTCATCTATNTTGGCTCGACGATGATACCAAACATNTGGGTGGCC
TTCAAGTTCACCGGTGNGNCGACGGGGTTGGCACTGGGGTTCATTTTCCCGGCCCTTATTGCATTGAGATTGGACAAGGA
AGGCAAGTCTTTAGGTAAGGGTGAGAGGCTCCTGTCAATTGTGATGCTTGGTTTGGCCATGGTTGTTAGCATTATTGGAG
TAATTGGAAATGTATACANCCTGAGGAGCAAGTNTGCATGATNTNTCATGATGANCAATTTAGTAGGGTTAGTGCATTGC
CATGGCAGTCATACAGANTGTATTAGCANGGTCAGATACANAAGACAGCAGAGGTANTNCTTGAGCAAAGCTCAGATNCA
TTTTGTTTACCTTTAGAGNTGCAGGAGCATTTCTTGAAGGTTTTTGTTTTTGNGAGCTTGGACTAGATTGACAGATTCTT
TGATGTATTTGCATTTATTGGTAAGGCAGCACAAGATGATAAGAAGCTGGTTGTGTTGTACTGCGAGGTTGTTGCCTGTC
TA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26866.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis