Browse Element(s) Details


Os.26907.1.S1_at

Description gb:AK120092.1
DB_XREF= gi:37989715
TID=Os.26907.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26907 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013021H05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013021H05, full insert sequence.
FL= gb:AK120092.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1771011/11Leucine Rich Repeat family protein, expressed
LOC_Os01g590801/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g17680Os.8589.1.S1_at11/112+10181424..10189199ethylene-responsive family protein, putative, expressed
LOC_Os02g17680Os.22508.2.S1_x_at1/112+10181424..10189199ethylene-responsive family protein, putative, expressed
LOC_Os02g17690OsAffx.2656.1.S1_at10/112+10197327..10199936hypothetical protein
LOC_Os02g17700Os.49441.1.S1_at11/112+10207345..10212944NADPH:adrenodoxin oxidoreductase, mitochondrial precursor, putative, expressed
LOC_Os02g17700Os.24140.1.A1_at1/112+10207345..10212944NADPH:adrenodoxin oxidoreductase, mitochondrial precursor, putative, expressed
LOC_Os02g17710Os.26907.1.S1_at11/112+10213161..10216348Leucine Rich Repeat family protein, expressed
LOC_Os02g17710Os.33851.3.A1_x_at1/112+10213161..10216348Leucine Rich Repeat family protein, expressed
LOC_Os02g17714NANA2+10226796..10228777hypothetical protein
LOC_Os02g17720Os.45957.4.S1_x_at1/112+10230581..10235374retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g17730OsAffx.2657.1.S1_at11/112+10239686..10240108Leucine Rich Repeat family protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26907.1.S1_at--254--1011Chr02:10213719..10213743 (25 bp)
AGGATATCCTGGACCAACGCATCAT
LOC_Os02g17710
Os.26907.1.S1_at--305--872Chr02:10213696..10213720 (25 bp)
ATGGCGCCGACCACCGAAGAGAAGG
LOC_Os02g17710
Os.26907.1.S1_at--1115--3531Chr02:10213667..10213691 (25 bp)
CATCCTGCTTGTTCTGGTGGCTTTT
LOC_Os02g17710
Os.26907.1.S1_at--136--9471Chr02:10213655..10213679 (25 bp)
TCTGGTGGCTTTTGCTTGCCTGCAA
LOC_Os02g17710
Os.26907.1.S1_at--776--2451Chr02:10213610..10213634 (25 bp)
AACAATGCAGCAGGTTTGTCAAGCA
LOC_Os02g17710
Os.26907.1.S1_at--360--6171Chr02:10213329..10213353 (25 bp)
GAGGATATGTTCATGTAAGCTACAC
LOC_Os02g17710
Os.26907.1.S1_at--516--8131Chr02:10213263..10213287 (25 bp)
GGACACTCCCTTTTTAGGCTTGCTT
LOC_Os02g17710
Os.26907.1.S1_at--1095--911Chr02:10213248..10213272 (25 bp)
AGGCTTGCTTCTATCTGAGAGATCA
LOC_Os02g17710
Os.26907.1.S1_at--182--3531Chr02:10213218..10213242 (25 bp)
CATGCAGTGTAGTTCTTTGATTGTT
LOC_Os02g17710
Os.26907.1.S1_at--642--9551Chr02:10213205..10213229 (25 bp)
TCTTTGATTGTTTTTCTACGTCGAA
LOC_Os02g17710
Os.26907.1.S1_at--873--10391Chr02:10213166..10213190 (25 bp)
TTTTGCCTGAACATGTACACTTTTT
LOC_Os02g17710
Target Sequence 
AGGATATCCTGGACCAACGCATCATGGCGCCGACCACCGAAGAGAAGGATATCATCCTGCTTGTTCTGGTGGCTTTTGCT
TGCCTGCAAATCTGCCCAAAATCCCGGCCAACAATGCAGCAGGTTTGTCAAGCAATGACAACTAGAAGTTTACCTGCTCC
TATCCTGAAGCCCCTTGATGAGATCAAATTGCAGCATTTCCATGATTTTTGTGGAACTATACAGAATATATGATGAAATT
TACATCNTAAGGGGCGCATTTTGCATTAAAAAAAAANGAGAAGCCCCTTAATGAGATCAAACTGCAGCATTTCCATGATT
TTTGTGGAACCATACAGAATATATGATGAAATTTACTTCATAAGGGGCGCATTTTGCATTAAAAAAAGAGAGAGGATATG
TTCATGTAAGCTACACAAAGCATCTGAAGTTGAAGTTACAACGGCTACTGGNTNCAGGGACACTCCCTTTTTAGGCTTGC
TTCTATCTGAGAGATCATTTTACATGCAGTGTAGTTCTTTGATTGTTTTTCTACGTCGAACAAAATTATTTATTTTTTGC
CTGAACATGTACACTTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26907.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis