Browse Element(s) Details


Os.26958.1.S1_at

Description gb:AK065750.1
DB_XREF= gi:32975768
TID=Os.26958.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26958 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative transcription factor (P0044F08.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013039A03, full insert sequence.
FL= gb:AK065750.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0357011/11X1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g03520Os.965.2.S1_x_at11/111+1418495..1424845Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os01g03520Os.965.1.S1_at11/111+1418495..1424845Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os01g03530Os.23181.1.S1_at11/111+1430798..1433611Multicopper oxidase family protein, expressed
LOC_Os01g03549Os.50498.1.S1_at11/111+1433965..1442401Spore coat protein A, putative, expressed
LOC_Os01g03570Os.26958.1.S1_at11/111+1443664..1447275X1, putative, expressed
LOC_Os01g03580NANA1+1448279..1451484transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g03590NANA1+1454749..1456784transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g03600OsAffx.22848.3.S1_x_at3/111+1464537..1468604retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g03600OsAffx.22848.4.S1_at2/111+1464537..1468604retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g03600OsAffx.22848.4.S1_x_at1/111+1464537..1468604retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g03610OsAffx.17567.1.S1_x_at1/111+1471189..1474669retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26958.1.S1_at--1000--5471Chr01:1446752..1446776 (25 bp)
GAACTTAACGAGTACAACCCCAGTG
LOC_Os01g03570
Os.26958.1.S1_at--626--4131Chr01:1446779..1446803 (25 bp)
CGCTATCCTGTACCAGAGCTTTGGA
LOC_Os01g03570
Os.26958.1.S1_at--1026--2771Chr01:1446834..1446858 (25 bp)
AAGAGGTCGTCCAATACGTCCTCAA
LOC_Os01g03570
Os.26958.1.S1_at--711--6711Chr01:1446988..1447012 (25 bp)
GTTCGATCTATCTGTGTTTGTATGT
LOC_Os01g03570
Os.26958.1.S1_at--1117--4731Chr01:1447014..1447038 (25 bp)
GCTGTTGAACCAATGATCCTCTGTA
LOC_Os01g03570
Os.26958.1.S1_at--77--571Chr01:1447029..1447053 (25 bp)
ATCCTCTGTAGGTATGGTATGCTCC
LOC_Os01g03570
Os.26958.1.S1_at--59--7871Chr01:1447044..1447068 (25 bp)
GGTATGCTCCATATCTATGTGGTTG
LOC_Os01g03570
Os.26958.1.S1_at--432--7911Chr01:1447064..1447088 (25 bp)
GGTTGGGCGCTGATCTGCAAATTAA
LOC_Os01g03570
Os.26958.1.S1_at--825--3011Chr01:1447148..1447172 (25 bp)
AATGCTTGCGTGATTCTTGACCCAG
LOC_Os01g03570
Os.26958.1.S1_at--855--2071Chr01:1447186..1447210 (25 bp)
ACATTCTGCCAGTGAGATACGTAAC
LOC_Os01g03570
Os.26958.1.S1_at--689--9891Chr01:1447221..1447245 (25 bp)
TACTGTTGTTAATCTTTCCTCCATG
LOC_Os01g03570
Target Sequence 
GAACTTAACGAGTACAACCCCAGTGGCCGCTATCCTGTACCAGAGCTTTGGAACTTCAAGGAGAACCGGAAAGCAACACT
CAAAGAGGTCGTCCAATACGTCCTCAATCAGTGGAAGAAGAACAAGAGGAAGCGTTGAGCCCAGGGGTATANNNNNNNNN
NNNNNNNNNNNNNNACTCCTAATGATGAGTCGGCTAGACTGATTAAAAGCATTGTTATGGCATGGACATTGTGAATGCCT
GCTAATTTTAGACTGAGGGGTTCGATCTATCTGTGTTTGTATGTTGCTGTTGAACCAATGATCCTCTGTAGGTATGGTAT
GCTCCATATCTATGTGGTTGGGCGCTGATCTGCAAATTAANTNNCAGAACCACTGCGACCAAGNTTGCAGTTCATATGGA
GTATATTGATTTGTTTTGCAATGCTTGCGTGATTCTTGACCCAGTAAACTGTTCTGAACATTCTGCCAGTGAGATACGTA
ACTTGTTTGGACTACTGTTGTTAATCTTTCCTCCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26958.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis