Browse Element(s) Details


Os.26963.1.A1_at

Description gb:AK120825.1
DB_XREF= gi:37990448
TID=Os.26963.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26963 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023019E06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023019E06, full insert sequence.
FL= gb:AK120825.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2858011/11expressed protein
LOC_Os09g1598011/11expressed protein
LOC_Os07g080701/11Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os06g511001/11MAP kinase-activating protein C22orf5 homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g28520OsAffx.21119.2.S1_at11/111+16295213..16296418F-box domain containing protein
LOC_Os01g28520OsAffx.21119.1.S1_s_at11/111+16295213..16296418F-box domain containing protein
LOC_Os01g28530Os.45173.1.S1_x_at3/111+16297336..16299567retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g28540Os.27627.1.S1_at10/111+16302192..16307413expressed protein
LOC_Os01g28550NANA1+16310431..16312975retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g28560NANA1+16313444..16314411retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g28570OsAffx.23432.1.S1_at11/111+16317441..16318181pentatricopeptide, putative
LOC_Os01g28580Os.26963.1.A1_at11/111+16319625..16323710expressed protein
LOC_Os01g28580OsAffx.19810.4.S1_s_at1/111+16319625..16323710expressed protein
LOC_Os01g28590OsAffx.11244.1.S1_at11/111+16324389..16324907hypothetical protein
LOC_Os01g28600OsAffx.23433.1.S1_at11/111+16327831..16330192Exo70 exocyst complex subunit family protein, expressed
LOC_Os01g28610OsAffx.11245.1.S1_at10/111+16331527..16333544hypothetical protein
LOC_Os01g28620OsAffx.23434.2.S1_x_at11/111+16334793..16346615hypothetical protein
LOC_Os01g28630Os.52782.1.S1_at1/111+16347093..16348389retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0016595molecular_functionglutamate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26963.1.A1_at--444--9553Chr10:10786688..10786712 (25 bp)
TCTTATGCCCTCTTGCAAATATATA
NONE
Os.26963.1.A1_at--846--6533Chr10:10786734..10786758 (25 bp)
GATTTACTATTAACAAACGCCCGAT
NONE
Os.26963.1.A1_at--629--7373Chr10:10786801..10786825 (25 bp)
GTGACCTATTTTAAGCAAGCCATGC
NONE
Os.26963.1.A1_at--390--5153Chr10:10786815..10786839 (25 bp)
GCAAGCCATGCTTTAGTTCCTTTTT
NONE
Os.26963.1.A1_at--611--7813Chr10:10786979..10787003 (25 bp)
GGTCAACGACGTAGTAATATGCCCG
NONE
Os.26963.1.A1_at--758--9753Chr09:9771831..9771855 (25 bp)
TAATATGCCCGTGCATCTTGTTCTT
LOC_Os09g15980
Os.26963.1.A1_at--34--4553Chr09:9771837..9771861 (25 bp)
GCCCGTGCATCTTGTTCTTTAGATA
LOC_Os09g15980
Os.26963.1.A1_at--209--6454Chr10:10787020..10787044 (25 bp)
GATACAGATCTTAGCTAGGATTTGG
NONE
Os.26963.1.A1_at--717--612Chr09:9771900..9771924 (25 bp)
ATGCGTTCACATGTATAAGGGTCAC
LOC_Os09g15980
Os.26963.1.A1_at--521--5513Chr10:10787100..10787124 (25 bp)
GAACAATCAGATTTATATCCCTGGG
NONE
Os.26963.1.A1_at--394--9313Chr10:10787117..10787141 (25 bp)
TCCCTGGGATTCATGTTCTGGGCAG
NONE
Target Sequence 
TCTTATGCCCTCTTGCAAATATATANATTTTTTTGAGAAATTTAANGATTTACTATTAACAAACGCCCGATTATTTTTTC
TTTTTTTAAAANGTGATCATTTTGCTCATAAAATGTGACCTATTTTAAGCAAGCCATGCTTTAGTTCCTTTTTAAAAAAT
TNCATTCAAATAACAGTGCATTAGCACAAAAATGTGCCGTTGTNTGCTGGGCTNTTTTTCTCTCAAAGGTTTAGAAGTGA
CAAATTAAAAATCTTGGACNATTGAAGTCATATNCTTGGAGGATGATCCCCTGGTCAACGACGTAGTAATATGCCCGTGC
ATCTTGTTCTTTAGATACAGATCTTAGCTAGGATTTGGGATGAAAGCAAAAAAANATGCGTTCACATGTATAAGGGTCAC
AGAGGACCAATTAGAACAATCAGATTTATATCCCTGGGATTCATGTTCTGGGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26963.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis