Browse Element(s) Details


Os.2698.3.S1_x_at

Description gb:AK119607.1
DB_XREF= gi:37989230
TID=Os.2698.3
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2698 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) myb-related transcription factor (P0425G02.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-117-F06, full insert sequence.
FL= gb:AK119607.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5966011/11Transcription factor GAMYB, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g59620Os.35901.1.S1_at10/111+34807419..34811830YDG/SRA domain containing protein, expressed
LOC_Os01g59630Os.23590.1.A1_at10/111+34812128..34816646Exostosin family protein, expressed
LOC_Os01g59640OsAffx.9467.1.S1_at11/111+34817654..34819545No apical meristem protein, expressed
LOC_Os01g59660Os.2698.3.S1_x_at11/111+34835213..34839625Transcription factor GAMYB, putative, expressed
LOC_Os01g59660OsAffx.30142.1.S1_x_at1/111+34835213..34839625Transcription factor GAMYB, putative, expressed
LOC_Os01g59670OsAffx.9464.2.S1_x_at11/111+34840966..34847732expressed protein
LOC_Os01g59670Os.23591.1.A1_at10/111+34840966..34847732expressed protein
LOC_Os01g59680Os.54928.1.S1_at11/111+34851347..34853377Harpin-induced protein 1 containing protein, expressed
LOC_Os01g59690Os.11125.1.S1_a_at11/111+34858623..34860620F-box family protein, putative, expressed
LOC_Os01g59700OsAffx.11667.1.S1_at11/111+34863722..34864295hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009740biological_processgibberellic acid mediated signaling
GO:0045449biological_processregulation of transcription
GO:0048234biological_processmale gamete generation (sensu Magnoliophyta)
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2698.3.S1_x_at--665--2051Chr01:34839059..34839083 (25 bp)
ACTTCAGGCCAGATGCATTGTTTTC
LOC_Os01g59660
Os.2698.3.S1_x_at--281--8891Chr01:34839146..34839170 (25 bp)
TGAGTATCGATTGCAGACCTGTTCT
LOC_Os01g59660
Os.2698.3.S1_x_at--381--1391Chr01:34839160..34839184 (25 bp)
AGACCTGTTCTTGGCGACGGTATCA
LOC_Os01g59660
Os.2698.3.S1_x_at--294--5751Chr01:34839175..34839199 (25 bp)
GACGGTATCATGTTCAATTCTTCCT
LOC_Os01g59660
Os.2698.3.S1_x_at--1117--3131Chr01:34839190..34839214 (25 bp)
AATTCTTCCTCGTGGAGCAACATGC
LOC_Os01g59660
Os.2698.3.S1_x_at--1117--10231Chr01:34839255..34839279 (25 bp)
TTTGGTATTTGCCAGACGCTACAGC
LOC_Os01g59660
Os.2698.3.S1_x_at--908--5031Chr01:34839278..34839395 (25 bp)
GCAGATTCTTGGCACTATCAGATGT
LOC_Os01g59660
Os.2698.3.S1_x_at--838--3431Chr01:34839389..34839413 (25 bp)
CAGATGTTCTCTTATGCGACTAGCC
LOC_Os01g59660
Os.2698.3.S1_x_at--124--4611Chr01:34839404..34839428 (25 bp)
GCGACTAGCCCTTTTGTCCAATAAA
LOC_Os01g59660
Os.2698.3.S1_x_at--470--1431Chr01:34839479..34839503 (25 bp)
AGAACCCTTTTTGTCATCTCTATTG
LOC_Os01g59660
Os.2698.3.S1_x_at--216--3771Chr01:34839496..34839520 (25 bp)
CTCTATTGCCCGAATTCTGTTGGAA
LOC_Os01g59660
Target Sequence 
ACTTCAGGCCAGATGCATTGTTTTCTGGGAATACAGCTGATCCATCAGTTTTCAACAATGCCATAGCAATGCTTCTGGGC
AATGACTTGAGTATCGATTGCAGACCTGTTCTTGGCGACGGTATCATGTTCAATTCTTCCTCGTGGAGCAACATGCCACA
CGCCTGTGAAATGTCAGAATTCAAATGAATTCTGTATTTGGTATTTGCCAGACGCTACAGCAGATTCTTGGCACTATCAG
ATGTTCTCTTATGCGACTAGCCCTTTTGTCCAATAAAGTAGTGCATGGAGATAAGCCGGTTAATTATTGTTTTCTTTTTT
GTATTAGAGAACCCTTTTTGTCATCTCTATTGCCCGAATTCTGTTGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2698.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis