Browse Element(s) Details


Os.27031.1.S1_at

Description gb:AK066930.1
DB_XREF= gi:32976948
TID=Os.27031.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27031 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013092B01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013092B01, full insert sequence.
FL= gb:AK066930.1 gb:AK061965.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2623411/11Alpha amylase, catalytic domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g26170OsAffx.4944.1.S1_at10/116+15310053..15311897hypothetical protein
LOC_Os06g26180OsAffx.27828.1.S1_at11/116+15313826..15315157hypothetical protein
LOC_Os06g26180OsAffx.23345.1.S1_at2/116+15313826..15315157hypothetical protein
LOC_Os06g26180OsAffx.28650.1.S1_x_at1/116+15313826..15315157hypothetical protein
LOC_Os06g26190Os.21300.2.S1_at1/116+15323219..15325452hypothetical protein
LOC_Os06g26190Os.21300.2.S1_x_at1/116+15323219..15325452hypothetical protein
LOC_Os06g26190OsAffx.27854.1.S1_at1/116+15323219..15325452hypothetical protein
LOC_Os06g26210OsAffx.15622.1.S1_at11/116+15328732..15331084hypothetical protein
LOC_Os06g26234OsAffx.15623.1.S1_at11/116+15334688..15364532Alpha amylase, catalytic domain containing protein, expressed
LOC_Os06g26234Os.27031.1.S1_at11/116+15334688..15364532Alpha amylase, catalytic domain containing protein, expressed
LOC_Os06g26234OsAffx.28472.1.A1_x_at10/116+15334688..15364532Alpha amylase, catalytic domain containing protein, expressed
LOC_Os06g26234OsAffx.13933.1.S1_x_at1/116+15334688..15364532Alpha amylase, catalytic domain containing protein, expressed
LOC_Os06g26234Os.57509.1.A1_at1/116+15334688..15364532Alpha amylase, catalytic domain containing protein, expressed
LOC_Os06g26260OsAffx.278.1.S1_at1/116+15373216..15377050retrotransposon protein, putative, unclassified
LOC_Os06g26270Os.51757.1.S1_at11/116+15378506..15383234expressed protein
LOC_Os06g26280OsAffx.27830.1.S1_at11/116+15387453..15388457hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0010021biological_processamylopectin biosynthesis
GO:0003844molecular_function1,4-alpha-glucan branching enzyme activity
GO:0004556molecular_functionalpha-amylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27031.1.S1_at--387--2231Chr06:15363032..15363053 (22 bp)
ACAATAGGGTTGGTGGTTGCCGCAA
LOC_Os06g26234
Os.27031.1.S1_at--1129--7891Chr06:15363043..15363067 (25 bp)
GGTTGCCGCAACTCCTTGGAATTGA
LOC_Os06g26234
Os.27031.1.S1_at--683--2071Chr06:15363067..15363091 (25 bp)
ACATTACCATCTAGGAGTGCTCAGG
LOC_Os06g26234
Os.27031.1.S1_at--606--1691Chr06:15364182..15364206 (25 bp)
ACCACCGTAGTGAGAGGATCCTTCA
LOC_Os06g26234
Os.27031.1.S1_at--24--10831Chr06:15364236..15364260 (25 bp)
TTGGGTTGATGTTCGACGTCTCTGA
LOC_Os06g26234
Os.27031.1.S1_at--120--5771Chr06:15364250..15364274 (25 bp)
GACGTCTCTGATTTGACCTTCTGTT
LOC_Os06g26234
Os.27031.1.S1_at--579--10451Chr06:15364306..15364330 (25 bp)
TTAGACCTCAAATTGCCTGTTCTGC
LOC_Os06g26234
Os.27031.1.S1_at--848--8751Chr06:15364338..15364362 (25 bp)
TGTACCTTGATTCCATGCCTAGTGT
LOC_Os06g26234
Os.27031.1.S1_at--245--7531Chr06:15364367..15364391 (25 bp)
GTGGCACCGTGGCTAGTTTAATCAA
LOC_Os06g26234
Os.27031.1.S1_at--59--10191Chr06:15364407..15364431 (25 bp)
TATAGACTCATAGCTCCACAGTGAA
LOC_Os06g26234
Os.27031.1.S1_at--1132--911Chr06:15364463..15364487 (25 bp)
AGGCTTTGTTTGTTCCAGCTGGGAA
LOC_Os06g26234
Target Sequence 
ACAATAGGGTTGGTGGTTGCCGCAACTCCTTGGAATTGACATTACCATCTAGGAGTGCTCAGGTATTCAAGTTGGTCCGA
ATTTTGAGAATTTAGATTCTCAAGGATGAGCATTGTTGATAGACCAAGCAATTCGGGTCCTCAGAAGACGGAACTTCTCT
GTTAATATCTGAACTCTTGCAAACTTAAAGATTCGCATGGCAAAAACTGAGGGGAAAAGAACACCACCGTAGTGAGAGGA
TCCTTCAGGTATGAATGTCCATGCAGATGCAGATTGTTGGGTTGATGTTCGACGTCTCTGATTTGACCTTCTGTTGTGGT
ACAATATGAAGTATTGCAGTATTTATTTAGACCTCAAATTGCCTGTTCTGCTCACTCGTGTACCTTGATTCCATGCCTAG
TGTGGGCGTGGCACCGTGGCTAGTTTAATCAAGGATGCTATAGAGTATATAGACTCATAGCTCCACAGTGAAACGCTCAT
AAGGAGTGCTATTGAAACTAATAAGGCTTTGTTTGTTCCAGCTGGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27031.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis