Browse Element(s) Details


Os.27104.1.S1_at

Description gb:AK065843.1
DB_XREF= gi:32975861
TID=Os.27104.1
CNT=25
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27104 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033044B11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013042C14, full insert sequence.
FL= gb:AK073523.1 gb:AK058946.1 gb:AK065843.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4782010/11Acyl-CoA dehydrogenase, C-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g47750Os.50018.1.S1_at11/117+28530232..28531008expressed protein
LOC_Os07g47760Os.55286.1.S1_at11/117+28532570..28533634expressed protein
LOC_Os07g47770OsAffx.28947.1.S1_at11/117+28534147..28534877expressed protein
LOC_Os07g47780Os.39173.1.S1_at11/117+28535893..2853841160S ribosomal protein L18, putative, expressed
LOC_Os07g47790Os.8920.1.S1_at11/117+28539007..28540103AP2 domain containing protein, expressed
LOC_Os07g47800OsAffx.424.1.S1_at10/117+28541770..28544079hAT family dimerisation domain containing protein
LOC_Os07g47810OsAffx.16754.1.S1_at11/117+28548084..28549626hypothetical protein
LOC_Os07g47820Os.27104.1.S2_at11/117+28550948..28557326Acyl-CoA dehydrogenase, C-terminal domain containing protein, expressed
LOC_Os07g47820Os.27104.1.S1_at10/117+28550948..28557326Acyl-CoA dehydrogenase, C-terminal domain containing protein, expressed
LOC_Os07g47830Os.11456.1.S1_at6/117+28557393..28561263Pectinesterase family protein, expressed
LOC_Os07g47840Os.51758.2.S1_at11/117+28564422..28565349expressed protein
LOC_Os07g47850OsAffx.16755.1.S1_at11/117+28573227..28575404hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0006552biological_processleucine catabolism
GO:0005739cellular_componentmitochondrion
GO:0005759cellular_componentmitochondrial matrix
GO:0008470molecular_functionisovaleryl-CoA dehydrogenase activity
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27104.1.S1_at--33--8191Chr07:28553113..28553137 (25 bp)
GGAAGCCTGCTCGTTACCAGAAGAT
LOC_Os07g47820
Os.27104.1.S1_at--481--2491Chr07:28553201..28553225 (25 bp)
AACAGGTCTTGTTCATGGTGATTAC
LOC_Os07g47820
Os.27104.1.S1_at--535--6671NONE
GTTGCATACAGCTCTTTGCCGTATA
NONE
Os.27104.1.S1_at--1054--8511Chr07:28554237..28554261 (25 bp)
TGGAAGAGTACCTCGCTGCATACTG
LOC_Os07g47820
Os.27104.1.S1_at--122--9071Chr07:28554253..28554424 (25 bp)
TGCATACTGCTCTATCTCTGCAAGA
LOC_Os07g47820
Os.27104.1.S1_at--473--1811Chr07:28554424..28554448 (25 bp)
ACCCTGGCCGGCTGCAAGTTGGAAG
LOC_Os07g47820
Os.27104.1.S1_at--114--5351Chr07:28554445..28554469 (25 bp)
GAAGTTTTATGTTGCCTTTTCGCTT
LOC_Os07g47820
Os.27104.1.S1_at--1091--7371Chr07:28554602..28554626 (25 bp)
GTGAGCGTGCTAGATTTTCTGGCAA
LOC_Os07g47820
Os.27104.1.S1_at--339--6591Chr07:28554627..28554651 (25 bp)
GATTGCTAATGCTATGGTTGACCGT
LOC_Os07g47820
Os.27104.1.S1_at--368--6651Chr07:28554643..28554667 (25 bp)
GTTGACCGTGCCTGGGATATCATAA
LOC_Os07g47820
Os.27104.1.S1_at--835--7851Chr07:28554896..28554920 (25 bp)
GGTATGCATGCCTCAAATGGCCCAT
LOC_Os07g47820
Target Sequence 
GGAAGCCTGCTCGTTACCAGAAGATGCTTGATCTAGCTCATNTGGTTGAAAGAACATATACCAAAAGAAGATTCATCGGC
AGGATTTGGAACAGGTCTTGTTCATGGTGATTACCGTGTTGATAATCTTGTTTTTCATCCAACAGAGGACCGAGTTATTG
GTGTACTTGATTGGGAACTATCTACTTTGGGTAATCAAATGTGTGATGTTGCATACAGCTCTTTGCCGTATATTATTGAT
GCAACAACTAGTACAGGTTATTCTTATGGTGGATTTGAATATACTGGCATTCCAGATGGCATTCCCCCACTGGAAGAGTA
CCTCGCTGCATACTGCTCTATCTCTGCAAGACCCTGGCCGGCTGCAAGTTGGAAGTTTTATGTTGCCTTTTCGCTTTTTC
GAGGGGCATCTATATATGCAGGAGTATATCACAGATGGACTATGGGTAATGCTTCAGGTGGTGAGCGTGCTAGATTTTCT
GGCAAGATTGCTAATGCTATGGTTGACCGTGCCTGGGATATCATAAATAGAGAAAATGTCCTGAGAGAACAGCCTGCTAG
GGGTATGCATGCCTCAAATGGCCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27104.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis