Browse Element(s) Details


Os.27158.1.S1_at

Description gb:AK069289.1
DB_XREF= gi:32979313
TID=Os.27158.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27158 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023012I24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023012I24, full insert sequence.
FL= gb:AK069289.1 gb:AK060458.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1559411/11protein phosphatase 2C, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g15560Os.9016.1.S1_x_at11/112+8732272..8737877transposon protein, putative, Mutator sub-class, expressed
LOC_Os02g15560OsAffx.26273.1.S1_at6/112+8732272..8737877transposon protein, putative, Mutator sub-class, expressed
LOC_Os02g15570OsAffx.2625.1.S1_at11/112+8741014..8742325hypothetical protein
LOC_Os02g15580Os.5666.1.S1_at11/112+8747017..8754114Cyclic nucleotide-gated ion channel 1, putative, expressed
LOC_Os02g15580Os.5666.2.S1_at11/112+8747017..8754114Cyclic nucleotide-gated ion channel 1, putative, expressed
LOC_Os02g15594Os.27158.1.S1_at11/112+8760003..8766248protein phosphatase 2C, putative, expressed
LOC_Os02g15610Os.47970.1.S1_at11/112+8766791..876927840S ribosomal protein S15a, putative, expressed
LOC_Os02g15620OsAffx.2626.1.S1_at11/112+8779113..8781621AT-rich element binding factor 3, putative
LOC_Os02g15630Os.2741.4.S1_x_at11/112+8783919..8792096retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g15630OsAffx.2627.1.S1_at9/112+8783919..8792096retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0015071molecular_functionprotein phosphatase type 2C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27158.1.S1_at--799--8751Chr02:8765277..8765301 (25 bp)
TGTACTGGCAATGTCGCGTGCATTT
LOC_Os02g15594
Os.27158.1.S1_at--291--8231Chr02:8765302..8765326 (25 bp)
GGCAATCGTCTACTGAAGCCATTTG
LOC_Os02g15594
Os.27158.1.S1_at--348--5371Chr02:8765581..8765605 (25 bp)
GAAGACTTGGAATGCCTCGTTCTTG
LOC_Os02g15594
Os.27158.1.S1_at--726--591Chr02:8765592..8765616 (25 bp)
ATGCCTCGTTCTTGCTAGCGATGGA
LOC_Os02g15594
Os.27158.1.S1_at--347--2471Chr02:8765836..8765860 (25 bp)
AACAGAAGACCTGCCTGAGTCGGTG
LOC_Os02g15594
Os.27158.1.S1_at--1024--3071Chr02:8765878..8765902 (25 bp)
AATAGCCTATTCTCGAGGCAGCGCT
LOC_Os02g15594
Os.27158.1.S1_at--61--6211Chr02:8765892..8765916 (25 bp)
GAGGCAGCGCTGACAACATTACATG
LOC_Os02g15594
Os.27158.1.S1_at--49--10511Chr02:8765997..8766021 (25 bp)
TTCAAGCTACTTTCCAGCAGTCCAA
LOC_Os02g15594
Os.27158.1.S1_at--1037--8773Chr06:19448289..19448308 (20 bp)
TGTTTCGTTGATTCTTTTCCTTGTG
NONE
Os.27158.1.S1_at--382--10131Chr02:8766202..8766226 (25 bp)
TTACCTAATTACCTGCCATTACGGG
LOC_Os02g15594
Os.27158.1.S1_at--652--9931Chr02:8766221..8766245 (25 bp)
TACGGGCATGGCATATAATTCTCGA
LOC_Os02g15594
Target Sequence 
TGTACTGGCAATGTCGCGTGCATTTGGCAATCGTCTACTGAAGCCATTTGTGGTGGCAGAGCCTGAAATTCAGGAAGAAC
TTGTCAATGAAGACTTGGAATGCCTCGTTCTTGCTAGCGATGGACTTTGGGATGTCGTGGAAAATGAGGAAGCTGTTTCC
CTTGCGAAAACAGAAGACCTGCCTGAGTCGGTGGCTAGGAAACTCACGGAAATAGCCTATTCTCGAGGCAGCGCTGACAA
CATTACATGCATCGTGGTGCAATTTCACCATGATAAAACTGAATAATAAGATGGGACTAGAGCTGATGAAAGGTTGAAGG
TTTTTCTACTTCAAGCTACTTTCCAGCAGTCCAACCACAGAGGGGGTTCCCCAGGAGATGTTGCTCCTGTAGCATTTGCT
AAGGATTGTTTCGTTGATTCTTTTCCTTGTGTAGGAATCATTTTTTGTTTTCAGAGGTGTTACGAACAGAAAATTTTATT
TCGAGTGTAACACACAGTTTTAATTGGATGGATACTAATAAATCAATTGCTTGTTTACCTAATTACCTGCCATTACGGGC
ATGGCATATAATTCTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27158.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis