Browse Element(s) Details


Os.27162.1.A1_at

Description gb:CB679586
DB_XREF= gi:29683311
DB_XREF=OSJNEf03E06.r
CLONE=OSJNEf03E06
TID=Os.27162.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.27162 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_172347.1 (A.thaliana) unknown protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5991011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g59850Os.6002.1.S1_at11/111+34939499..34945854GTPase activating protein, putative, expressed
LOC_Os01g59850Os.6002.3.S1_x_at11/111+34939499..34945854GTPase activating protein, putative, expressed
LOC_Os01g59860Os.13245.1.S1_x_at11/111+34947082..34950777expressed protein
LOC_Os01g59870Os.13246.1.S1_at11/111+34953033..34955450Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os01g59880Os.53066.1.S1_at11/111+34959817..34962018expressed protein
LOC_Os01g59880Os.53066.1.S1_x_at11/111+34959817..34962018expressed protein
LOC_Os01g59890Os.25241.1.S1_at10/111+34963004..34966495expressed protein
LOC_Os01g59900Os.8824.1.S1_at11/111+34966593..34969643expressed protein
LOC_Os01g59910Os.27162.1.A1_at11/111+34970111..34973135F-box domain containing protein, expressed
LOC_Os01g59910Os.27162.1.A1_s_at11/111+34970111..34973135F-box domain containing protein, expressed
LOC_Os01g59910OsAffx.23861.1.S1_at11/111+34970111..34973135F-box domain containing protein, expressed
LOC_Os01g59920Os.12243.1.S1_at11/111+34973955..34977620cysteine synthase, chloroplast precursor, putative, expressed
LOC_Os01g59930Os.12219.1.S1_at10/111+34978925..34982302oxidoreductase, FAD-binding family protein, expressed
LOC_Os01g59940OsAffx.23862.1.S1_at11/111+34985578..34986219hypothetical protein
LOC_Os01g59950Os.48290.1.A1_at4/111+34990847..34991751expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27162.1.A1_at--1114--3751Chr01:34970523..34970547 (25 bp)
CTCTTCCTTGCCAGGCAAGTTGATA
LOC_Os01g59910
Os.27162.1.A1_at--796--3451Chr01:34970512..34970536 (25 bp)
CAGGCAAGTTGATAGGAAGCTCCAT
LOC_Os01g59910
Os.27162.1.A1_at--74--951Chr01:34970499..34970523 (25 bp)
AGGAAGCTCCATTGATCTTTCCCAA
LOC_Os01g59910
Os.27162.1.A1_at--642--2671Chr01:34970496..34970520 (25 bp)
AAGCTCCATTGATCTTTCCCAAATG
LOC_Os01g59910
Os.27162.1.A1_at--227--4331Chr01:34970491..34970515 (25 bp)
CCATTGATCTTTCCCAAATGCTGAA
LOC_Os01g59910
Os.27162.1.A1_at--309--5571Chr01:34970469..34970493 (25 bp)
GAAAGAATCTATTCTCATGGTGGTG
LOC_Os01g59910
Os.27162.1.A1_at--1090--10571Chr01:34970458..34970482 (25 bp)
TTCTCATGGTGGTGTGTGTACCGTC
LOC_Os01g59910
Os.27162.1.A1_at--1042--791Chr01:34970453..34970477 (25 bp)
ATGGTGGTGTGTGTACCGTCCAGCC
LOC_Os01g59910
Os.27162.1.A1_at--166--7751Chr01:34970448..34970472 (25 bp)
GGTGTGTGTACCGTCCAGCCGCCAG
LOC_Os01g59910
Os.27162.1.A1_at--246--10651Chr01:34970150..34970174 (25 bp)
TTCCGAATTGTACCCTCCAGCAAGG
LOC_Os01g59910
Os.27162.1.A1_at--108--5211Chr01:34970146..34970170 (25 bp)
GAATTGTACCCTCCAGCAAGGTTCT
LOC_Os01g59910
Target Sequence 
CTCTTCCTTGCCAGGCAAGTTGATAGGAAGCTCCATTGATCTTTCCCAAATGCTGAAAGAATCTATTCTCATGGTGGTGT
GTGTACCGTCCAGCCGCCAGCGGCCAGCTGTTTATACCATAGCTGAATAGTCAGTGCTGCTGGTGCCTATCTGTCATTCA
CGAAGCTGTGGGCGGTCAGCTGTTCTAGGGCAGCAGGACGACATACATCTGATCAAATTGCTTCCGCTGACCTTTGGGTT
GAAGAGATATGCACATGAAGCAAACCATGTTCCCTTTTTTTTTACCTTCAGTTTCAAAATGTTAGTATGCAATTAATTAA
GTACGTGGAAGCTTGTTTTCTGTAAGCTACTTCGTATACAAGTCAATCAACTCTTCCGAATTGTACCCTCCAGCAAGGTT
CT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27162.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis