Browse Element(s) Details


Os.27169.1.S1_s_at

Description gb:CB645166
DB_XREF= gi:29640157
DB_XREF=OSJNEb06L05.r
CLONE=OSJNEb06L05
TID=Os.27169.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.27169 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0004D12.22 (P0004D12.22), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6874011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68710Os.7639.1.S1_at11/111+40240756..40243343FK506-binding protein 2-1 precursor, putative, expressed
LOC_Os01g68710Os.55103.1.S1_x_at2/111+40240756..40243343FK506-binding protein 2-1 precursor, putative, expressed
LOC_Os01g68720Os.19350.1.S1_at7/111+40245799..40247149expressed protein
LOC_Os01g68730Os.7281.1.S1_at11/111+40249042..40250617expressed protein
LOC_Os01g68740Os.27169.1.S1_s_at11/111+40252434..40254109expressed protein
LOC_Os01g68740Os.56048.1.S1_s_at11/111+40252434..40254109expressed protein
LOC_Os01g68750Os.18887.1.S2_at11/111+40258122..40265005Adaptin N terminal region family protein, expressed
LOC_Os01g68750Os.18887.1.S1_at9/111+40258122..40265005Adaptin N terminal region family protein, expressed
LOC_Os01g68760Os.25007.1.S1_a_at11/111+40265602..40271728WW domain containing protein, expressed
LOC_Os01g68760Os.25007.1.S2_a_at11/111+40265602..40271728WW domain containing protein, expressed
LOC_Os01g68760Os.25007.3.S1_x_at11/111+40265602..40271728WW domain containing protein, expressed
LOC_Os01g68770Os.8353.1.S1_at11/111+40274921..40278368Selenium-binding protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0003723molecular_functionRNA binding
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27169.1.S1_s_at--554--6151Chr01:40253124..40253148 (25 bp)
GAGGTCGCCGCTGTACATCAACACT
LOC_Os01g68740
Os.27169.1.S1_s_at--863--371Chr01:40253108..40253132 (25 bp)
ATCAACACTCGCGAGGTCCACGTGT
LOC_Os01g68740
Os.27169.1.S1_s_at--856--4491Chr01:40252979..40253003 (25 bp)
GCCGTCGGCCATTTCTTCGACAGAA
LOC_Os01g68740
Os.27169.1.S1_s_at--448--10631Chr01:40252964..40252988 (25 bp)
TTCGACAGAAGGTTCGGCTTCCACA
LOC_Os01g68740
Os.27169.1.S1_s_at--669--8291Chr01:40252949..40252973 (25 bp)
GGCTTCCACAGCAGCGACTAATTAA
LOC_Os01g68740
Os.27169.1.S1_s_at--972--2011Chr01:40252916..40252940 (25 bp)
ACTAATTAATCGGTGACGCGCGTAA
LOC_Os01g68740
Os.27169.1.S1_s_at--133--6991Chr01:40252822..40252846 (25 bp)
GTACCGTCTGCGAGCTCTAGTATAC
LOC_Os01g68740
Os.27169.1.S1_s_at--76--6991Chr01:40252797..40252821 (25 bp)
GTACGACCGTATTTACGTGCGTATA
LOC_Os01g68740
Os.27169.1.S1_s_at--55--1212Chr03:24007058..24007252 (25 bp)
AGTATTTCTTCTTTGCATCTGCATA
NONE
Os.27169.1.S1_s_at--1045--311Chr01:40252722..40252746 (25 bp)
ATACGGCCGCAACGTGTATGTATGT
LOC_Os01g68740
Os.27169.1.S1_s_at--705--9051Chr01:40252643..40252667 (25 bp)
TGCAGTGTCGGTTTGTTTCATGTAC
LOC_Os01g68740
Target Sequence 
GAGGTCGCCGCTGTACATCAACACTCGCGAGGTCCACGTGTACGGGGGGCCGCATGGGCCGTACGACGGCGGCGACGGCT
ACGGCGGCGGCGGCGGCAGCGGCGAGAGGCGGCGCAGCGGCGGGTTCTTCCGCCCGGCGTTCGAGGCCGTCGGCCATTTC
TTCGACAGAAGGTTCGGCTTCCACAGCAGCGACTAATTAATTAATTATACTAATTAATCGGTGACGCGCGTAATNAACAC
GAAACTTGTACTATTATCACATGCATATATACGTACATCAGACTATCAGTATACGTACGTACGTACCGTCTGCGAGCTCT
AGTATACGTACGACCGTATTTACGTGCGTATACGTAATTATTAATTGCTCGCTTCTAATAAGTATTTCTTCTTTGCATCT
GCATACGGCCGCAACGTGTATGTATGTGTTTGTGGTTAATTGGCTTTATTTTTATTTATTTTTTCTTTCTTTTTTTCCGA
CTGCAGTGTCGGTTTGTTTCATGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27169.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis