Browse Element(s) Details

Os.27175.1.S1_a_at

Description

gb:AY324148.1
DB_XREF= gi:32816614
GEN=OsZIP1
TID=Os.27175.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27175 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative zinc transporter (OsZIP1) mRNA, complete cds.
PROD=putative zinc transporter
FL= gb:AY324148.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os07g12890	10/11	ZIP zinc/iron transport family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os07g12850	OsAffx.25180.1.S1_at	11/11	7	+	7361845..7368397	Protein kinase domain containing protein
LOC_Os07g12850	Os.50043.1.A1_at	1/11	7	+	7361845..7368397	Protein kinase domain containing protein
LOC_Os07g12860	Os.35344.18.S1_x_at	9/11	7	+	7370284..7376179	transposon protein, putative, Mutator sub-class
LOC_Os07g12860	Os.35344.3.S1_x_at	8/11	7	+	7370284..7376179	transposon protein, putative, Mutator sub-class
LOC_Os07g12860	OsAffx.22940.5.S1_x_at	3/11	7	+	7370284..7376179	transposon protein, putative, Mutator sub-class
LOC_Os07g12869	NA	NA	7	+	7377402..7378146	NA
LOC_Os07g12880	OsAffx.9930.1.S1_at	6/11	7	+	7389872..7391182	transposon protein, putative, Pong sub-class
LOC_Os07g12890	Os.27175.1.S1_a_at	10/11	7	+	7392790..7396016	ZIP zinc/iron transport family protein, expressed
LOC_Os07g12900	OsAffx.10206.1.S1_at	11/11	7	+	7404049..7407857	cadmium-translocating P-type ATPase family protein, expressed
LOC_Os07g12910	Os.28742.2.S1_at	10/11	7	+	7412879..7416346	PHD finger protein, putative, expressed
LOC_Os07g12910	Os.28742.1.S1_at	10/11	7	+	7412879..7416346	PHD finger protein, putative, expressed
LOC_Os07g12920	OsAffx.24510.1.S1_x_at	11/11	7	+	7417152..7418006	hypothetical protein

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0006812	biological_process	cation transport
GO:0006826	biological_process	iron ion transport
GO:0006828	biological_process	manganese ion transport
GO:0006829	biological_process	zinc ion transport
GO:0006879	biological_process	iron ion homeostasis
GO:0010043	biological_process	response to zinc ion
GO:0015691	biological_process	cadmium ion transport
GO:0009507	cellular_component	chloroplast
GO:0005375	molecular_function	copper ion transporter activity
GO:0005381	molecular_function	iron ion transporter activity
GO:0005384	molecular_function	manganese ion transporter activity
GO:0005385	molecular_function	zinc ion transporter activity
GO:0008324	molecular_function	cation transporter activity
GO:0015086	molecular_function	cadmium ion transporter activity
GO:0046873	molecular_function	metal ion transporter activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.27175.1.S1_a_at--442--223	1	Chr07:7393507..7393531 (25 bp)	ACAAGGAGACAACTCTCCGGCATCG	LOC_Os07g12890
Os.27175.1.S1_a_at--444--511	1	Chr07:7394244..7394268 (25 bp)	GCACTCGGTGATCATTGGCATCTCC	LOC_Os07g12890
Os.27175.1.S1_a_at--1094--839	1	Chr07:7394272..7394296 (25 bp)	GGCGCGTCACAGAATCCGGAAACCA	LOC_Os07g12890
Os.27175.1.S1_a_at--750--147	1	Chr07:7394282..7394306 (25 bp)	AGAATCCGGAAACCATCAAGCCGCT	LOC_Os07g12890
Os.27175.1.S1_a_at--628--337	1	Chr07:7394326..7394350 (25 bp)	CACCAAATGTTCGAGGGCATGGGAC	LOC_Os07g12890
Os.27175.1.S1_a_at--1151--383	1	NONE	CTGCATCGTGCAGGCGAAGTTCAAG	NONE
Os.27175.1.S1_a_at--466--121	1	Chr07:7395448..7395472 (25 bp)	AGTTCAAGGTGAGGTCGATCGTGAC	LOC_Os07g12890
Os.27175.1.S1_a_at--1129--639	1	Chr07:7395464..7395488 (25 bp)	GATCGTGACGATGGTCCTCTTCTTC	LOC_Os07g12890
Os.27175.1.S1_a_at--806--401	1	Chr07:7395532..7395556 (25 bp)	CGTCGGTGTACAACGAGAGCAGCCC	LOC_Os07g12890
Os.27175.1.S1_a_at--611--613	1	Chr07:7395573..7395597 (25 bp)	GAGGGCATCCTCAACTCCGTCGCGG	LOC_Os07g12890
Os.27175.1.S1_a_at--1085--961	1	Chr07:7395721..7395745 (25 bp)	TCATGTCCATGCTCGCCAAATGGGC	LOC_Os07g12890

Target Sequence

ACAAGGAGACAACTCTCCGGCATCGNGTCATCTCTCANGTTCTAGAGCTANGGATCGTGGTGCACTCGGTGATCATTGGC
ATCTCCCTCGGCGCGTCACAGAATCCGGAAACCATCAAGCCGCTGGTGGTCGCCCTCAGCTTCCACCAAATGTTCGAGGG
CATGGGACTCGGTGGCTGCATCGTGCAGGCGAAGTTCAAGGTGAGGTCGATCGTGACGATGGTCCTCTTCTTCTGCCTGA
CGACGCCGGTGGGGATCGCCGTCGGCGTGGGCATCTCGTCGGTGTACAACGAGAGCAGCCCGACGGCGCTGGTGGTGGAG
GGCATCCTCAACTCCGTCGCGGCGGGGATCCTCATCTACATGGCCCTCGTCGACCTCCTCGCCGAGGACTTCATGAACCC
CAGGGTGCAGAGCAAAGGCAAGCTCCAGCTCGGCATCAACCTCGCCATGCTCGCCGGCGCCGGCCTCATGTCCATGCTCG
CCAAATGGGC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis