Browse Element(s) Details


Os.27195.1.S1_at

Description gb:AK120747.1
DB_XREF= gi:37990370
TID=Os.27195.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.27195 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023004N22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023004N22, full insert sequence.
FL= gb:AK120747.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3464010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g34598Os.9987.1.S1_at11/117+20737812..20747764Tyrosyl-DNA phosphodiesterase family protein, expressed
LOC_Os07g34610Os.10487.1.S1_at10/117+20747982..20750138Oral cancer overexpressed protein 1 homolog, putative, expressed
LOC_Os07g34620Os.7660.1.S1_at11/117+20750572..20752817expressed protein
LOC_Os07g34630OsAffx.16556.1.S1_at11/117+20760328..20761107hypothetical protein
LOC_Os07g34640Os.27195.1.S1_at10/117+20763084..20767891expressed protein
LOC_Os07g34650Os.27798.1.S1_a_at11/117+20767406..20770653expressed protein
LOC_Os07g34660OsAffx.28751.1.S1_x_at11/117+20779138..20779443hypothetical protein
LOC_Os07g34670OsAffx.16557.1.S1_at11/117+20781337..20783022Peroxidase 1 precursor, putative, expressed
LOC_Os07g34680OsAffx.28752.1.S1_at11/117+20783811..20784690hypothetical protein
LOC_Os07g34690Os.57292.1.S1_at11/117+20788143..20789013expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27195.1.S1_at--1017--2371Chr07:20765591..20765615 (25 bp)
AAACCCTGTGGTTCTTCAAGCAATC
LOC_Os07g34640
Os.27195.1.S1_at--91--8231Chr07:20765621..20765645 (25 bp)
GGCAAGGGCCAAAACTCTAGGATTT
LOC_Os07g34640
Os.27195.1.S1_at--1118--9591Chr07:20765699..20765723 (25 bp)
TCATGCCAATCAAATTTTCGCCCAG
LOC_Os07g34640
Os.27195.1.S1_at--288--2251Chr07:20765710..20765734 (25 bp)
AAATTTTCGCCCAGCATCCTATATG
LOC_Os07g34640
Os.27195.1.S1_at--227--2411Chr07:20765855..20765879 (25 bp)
AAACAGCTGCTGTCGTTGTGAGGAT
LOC_Os07g34640
Os.27195.1.S1_at--933--271Chr07:20765888..20765912 (25 bp)
ATAGGAAACAGAAGTGCGCCATGCC
LOC_Os07g34640
Os.27195.1.S1_at--700--1831NONE
ACGCATATCAAAACGGGTGGCTCCA
NONE
Os.27195.1.S1_at--1125--9471Chr07:20767179..20767203 (25 bp)
TCTGCAGCTGTGAAGTGAATCCAAA
LOC_Os07g34640
Os.27195.1.S1_at--578--4931Chr07:20767229..20767253 (25 bp)
GCATTTTTCACGTGTCCCATATTAG
LOC_Os07g34640
Os.27195.1.S1_at--141--7891Chr07:20767253..20767277 (25 bp)
GGTTAGCATCACCTGTGCATAGAGA
LOC_Os07g34640
Os.27195.1.S1_at--703--4311Chr07:20767309..20767333 (25 bp)
CCTTGTGAGCTGTGTGTCATATTCT
LOC_Os07g34640
Target Sequence 
AAACCCTGTGGTTCTTCAAGCAATCAGGAAGGCAAGGGCCAAAACTCTAGGATTTCATGGGCAAAAAAGCAATTATGNTG
AAATGGAACATGTCAGGGGGGAGTTGGATCATGCCAATCAAATTTTCGCCCAGCATCCTATATGGCCAGTCATNGAAGTC
ACTGGAAAAGCTATAGAGGAAACAGCTGCTGTCGTTGTGAGGATATTCCATGATAGGAAACAGAAGTGCGCCATGCCACG
CATATCAAAACGGGTGGCTCCAATTAGAATNTACGATTATCTGTCAGAGATGGTTANCACTCACGTTGAGTATCAAAAGA
TTTTTGCTAGGGACTTTTAAGTNTATTCTGCAGCTGTGAAGTGAATCCAAAANTNTAAAAAACTACCCNCTATCCGGCAT
TTTTCACGTGTCCCATATTAGGTTAGCATCACCTGTGCATAGAGAGGGTTTTAATTCATTTTGTAGATCATCACCNCCTT
GTGAGCTGTGTGTCATATTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27195.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis