Browse Element(s) Details


Os.27251.1.S1_at

Description gb:AK067970.1
DB_XREF= gi:32977988
TID=Os.27251.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.27251 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013124E20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013124E20, full insert sequence.
FL= gb:AK067970.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1035011/11oxidoreductase, 2OG-Fe oxygenase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g10300OsAffx.30349.1.S1_at11/114+5543179..5545562hypothetical protein
LOC_Os04g10300Os.20851.1.A1_x_at1/114+5543179..5545562hypothetical protein
LOC_Os04g10310OsAffx.13745.1.S1_at11/114+5546820..5550446hypothetical protein
LOC_Os04g10320OsAffx.25956.1.S1_at11/114+5550751..5553477hypothetical protein
LOC_Os04g10330NANA4+5557728..5558519hypothetical protein
LOC_Os04g10340NANA4+5568650..5568850hypothetical protein
LOC_Os04g10350Os.27251.1.S1_at11/114+5570432..5572705oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os04g10360OsAffx.13747.1.S1_at11/114+5576800..5579076Subtilase family protein, expressed
LOC_Os04g10370OsAffx.25958.1.S1_at11/114+5580662..5582967hypothetical protein
LOC_Os04g10380Os.24059.1.A1_at9/114+5589001..5610285glycine-rich protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016491molecular_functionoxidoreductase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27251.1.S1_at--190--5891Chr04:5572037..5572061 (25 bp)
GAGCGTTCATCGTCAATGTTGCCGA
LOC_Os04g10350
Os.27251.1.S1_at--414--471Chr04:5572061..5572192 (25 bp)
ATCTCCTGCAGTTGATCTCCAATGA
LOC_Os04g10350
Os.27251.1.S1_at--309--8771Chr04:5572257..5572281 (25 bp)
TGTTTCTTCAGCACCCATTTTCATC
LOC_Os04g10350
Os.27251.1.S1_at--262--3591Chr04:5572272..5572296 (25 bp)
CATTTTCATCCGATTTCCACGAGGA
LOC_Os04g10350
Os.27251.1.S1_at--1153--8751Chr04:5572297..5572321 (25 bp)
TGTATGGCCCGATCAAGGAGCTGTT
LOC_Os04g10350
Os.27251.1.S1_at--173--9871Chr04:5572344..5572368 (25 bp)
TACAGGGAGGCACTCGTCAGAGATT
LOC_Os04g10350
Os.27251.1.S1_at--323--7111Chr04:5572359..5572383 (25 bp)
GTCAGAGATTACACCGCGCGTTACT
LOC_Os04g10350
Os.27251.1.S1_at--65--9911Chr04:5572380..5572404 (25 bp)
TACTACTCCGTTGGGCTAGATGGCA
LOC_Os04g10350
Os.27251.1.S1_at--666--6231Chr04:5572398..5572422 (25 bp)
GATGGCAAGTTCAAGACTACTCTTT
LOC_Os04g10350
Os.27251.1.S1_at--660--5651Chr04:5572514..5572538 (25 bp)
GACAGTGTGTATGACTACTCCAGAG
LOC_Os04g10350
Os.27251.1.S1_at--1080--7491Chr04:5572612..5572636 (25 bp)
GTGGATCCACCCTTGTTTGTAAGGA
LOC_Os04g10350
Target Sequence 
GAGCGTTCATCGTCAATGTTGCCGATCTCCTGCAGTTGATCTCCAATGACAATTACAAGAGTGTGGAGCATAGAGTGNTG
GCGAAGAACACTGANCCGAGAGTCTNGATTNCCTGTTTCTTCAGCACCCATTTTCATCCGATTTCCACGAGGATGTATGG
CCCGATCAAGGAGCTGTTGTCTGATGAGAACCCNCCTTTGTACAGGGAGGCACTCGTCAGAGATTACACCGCGCGTTACT
ACTCCGTTGGGCTAGATGGCAAGTTCAAGACTACTCTTTNTGAATTCCGGTTATAGATTGGTAAAGAAAGTNTATGATGT
ACCGGTGTGAATTGTATCATGNACTTGAAATCAGTAAAGATAGAGATAGGGACAGTGTGTATGACTACTCCAGAGAGATG
ATGTACTTGGCATGTATGCTGTAGNCAACAGAATGGAAGTATAGTTTCAAACAATTACACAAGGAGCTGTGGATCCACCC
TTGTTTGTAAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27251.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis