Browse Element(s) Details


Os.27347.3.S1_at

Description gb:NM_187167.1
DB_XREF= gi:34901419
GEN=OSJNBa0075N02.16
TID=Os.27347.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.27347 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0683F02.12 (P0683F02.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0075N02.16 (OSJNBa0075N02.16), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2714010/11AT hook motif family protein
LOC_Os01g639105/11AT hook motif family protein, expressed
LOC_Os02g204404/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g27100OsAffx.22351.1.S1_at11/117+15711361..15711660hypothetical protein
LOC_Os07g27110Os.37197.1.S1_at11/117+15716642..15721424RNA recognition motif family protein, expressed
LOC_Os07g27120Os.8069.1.S1_at11/117+15724593..15728423expressed protein
LOC_Os07g27120Os.35374.1.S1_x_at10/117+15724593..15728423expressed protein
LOC_Os07g27130Os.45967.1.A1_at1/117+15728576..15729518hypothetical protein
LOC_Os07g27140Os.46440.1.A1_s_at11/117+15731085..15743951AT hook motif family protein
LOC_Os07g27140Os.27347.1.S1_a_at11/117+15731085..15743951AT hook motif family protein
LOC_Os07g27140Os.27347.3.S1_at10/117+15731085..15743951AT hook motif family protein
LOC_Os07g27140Os.36388.1.S1_at1/117+15731085..15743951AT hook motif family protein
LOC_Os07g27150Os.16878.1.S1_at11/117+15749432..15754093Trafficking protein particle complex subunit 4, putative, expressed
LOC_Os07g27150OsAffx.8670.1.S1_at4/117+15749432..15754093Trafficking protein particle complex subunit 4, putative, expressed
LOC_Os07g27159NANA7+15754852..15755082NA
LOC_Os07g27170NANA7+15757867..15764117retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g27180Os.44098.1.S1_at11/117+15767049..15785663TPR Domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27347.3.S1_at--336--8171Chr07:15735431..15735455 (25 bp)
GGAACTTCTTGCCAACTCAGGTAAT
LOC_Os07g27140
Os.27347.3.S1_at--53--9211Chr07:15735422..15735446 (25 bp)
TGCCAACTCAGGTAATCTCTGTCGC
LOC_Os07g27140
Os.27347.3.S1_at--1152--1011Chr07:15735413..15735437 (25 bp)
AGGTAATCTCTGTCGCCTGCAACTT
LOC_Os07g27140
Os.27347.3.S1_at--1096--3051Chr07:15735409..15735433 (25 bp)
AATCTCTGTCGCCTGCAACTTGTAT
LOC_Os07g27140
Os.27347.3.S1_at--57--7251Chr07:15735402..15735426 (25 bp)
GTCGCCTGCAACTTGTATCATTTTG
LOC_Os07g27140
Os.27347.3.S1_at--314--433Chr07:15735386..15735410 (25 bp)
ATCATTTTGCTTGTACCTGACATGC
LOC_Os07g27140
Os.27347.3.S1_at--325--173Chr07:15735383..15735407 (25 bp)
ATTTTGCTTGTACCTGACATGCCTG
LOC_Os07g27140
Os.27347.3.S1_at--903--8753Chr07:15735375..15735399 (25 bp)
TGTACCTGACATGCCTGCTTAACCA
LOC_Os07g27140
Os.27347.3.S1_at--1153--9173Chr07:15735364..15735388 (25 bp)
TGCCTGCTTAACCACCATACAGAAT
LOC_Os07g27140
Os.27347.3.S1_at--275--3372Chr07:15735352..15735376 (25 bp)
CACCATACAGAATACAATTGTGCTA
LOC_Os07g27140
Os.27347.3.S1_at--216--8291NONE
GGCATTATCCGGGTGTACCCACATA
NONE
Target Sequence 
GGAACTTCTTGCCAACTCAGGTAATCTCTGTCGCCTGCAACTTGTATCATTTTGCTTGTACCTGACATGCCTGCTTAACC
ACCATACAGAATACAATTGTGCTATAAATCCGAGCATCAGAGATGGTCAACAAGATGAACCTGATGAAGGACAAGAAACT
GGTGCCATAGTTTTAGCTGCTCCTTCAATGCAAGAGAATTTTGGCACAAGCACCAGCAGGGGTAGCGAATCCCCTGAAAA
TTTTGAGGTCTTTCCTCCTAAAGCTGTAGCATTGCATCGGTTGAGATGGAACATGAATAAAGGTAGCGAGAAATGGTTGT
GCTATGGAGGTGCTGCAGGCATTATCCGGGTGTACCCACATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27347.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis