Browse Element(s) Details


Os.27385.3.S1_at

Description gb:AK101899.1
DB_XREF= gi:32987108
TID=Os.27385.3
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27385 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033071B09, full insert sequence.
FL= gb:AK101899.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g156609/11NAD dependent epimerase/dehydratase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g15630Os.117.2.S1_x_at11/111+8783417..8789180C3H2C3 RING-finger protein, putative, expressed
LOC_Os01g15630Os.117.1.S1_at10/111+8783417..8789180C3H2C3 RING-finger protein, putative, expressed
LOC_Os01g15640Os.4387.1.S1_at10/111+8789456..8794160No apical meristem protein, expressed
LOC_Os01g15650NANA1+8802509..8805319transposon protein, putative, Mutator sub-class, expressed
LOC_Os01g15660Os.27385.2.S1_x_at11/111+8806191..8809898NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os01g15660Os.27385.3.S1_at9/111+8806191..8809898NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os01g15660Os.45507.1.S1_at1/111+8806191..8809898NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os01g15669OsAffx.11065.1.S1_x_at11/111+8813692..8815120Transferase family protein
LOC_Os01g15669OsAffx.11065.1.S1_at11/111+8813692..8815120Transferase family protein
LOC_Os01g15680Os.53832.1.S1_at10/111+8817938..8819411expressed protein
LOC_Os01g15680OsAffx.11065.1.S1_at3/111+8817938..8819411expressed protein
LOC_Os01g15680OsAffx.11065.1.S1_x_at2/111+8817938..8819411expressed protein
LOC_Os01g15680OsAffx.27865.1.S1_x_at1/111+8817938..8819411expressed protein
LOC_Os01g15690Os.35046.2.S1_x_at11/111+8819792..8824980retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g15690Os.35046.1.S1_at9/111+8819792..8824980retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g15700OsAffx.27865.1.S1_x_at10/111+8826346..8830871transposon protein, putative, Pong sub-class
LOC_Os01g15700Os.53832.1.S1_at8/111+8826346..8830871transposon protein, putative, Pong sub-class
LOC_Os01g15700OsAffx.9725.1.S1_at3/111+8826346..8830871transposon protein, putative, Pong sub-class
LOC_Os01g15700OsAffx.27865.2.S1_at1/111+8826346..8830871transposon protein, putative, Pong sub-class
LOC_Os01g15709OsAffx.11065.1.S1_at11/111+8832376..8833804Transferase family protein
LOC_Os01g15709OsAffx.11065.1.S1_x_at11/111+8832376..8833804Transferase family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27385.3.S1_at--137--3771Chr01:8809802..8809826 (25 bp)
CTCTATATTATATGCATCTCAAACT
LOC_Os01g15660
Os.27385.3.S1_at--1150--251Chr01:8809811..8809835 (25 bp)
ATATGCATCTCAAACTTGCTGTGAC
LOC_Os01g15660
Os.27385.3.S1_at--92--651Chr01:8809813..8809837 (25 bp)
ATGCATCTCAAACTTGCTGTGACTT
LOC_Os01g15660
Os.27385.3.S1_at--558--4971Chr01:8809815..8809839 (25 bp)
GCATCTCAAACTTGCTGTGACTTAA
LOC_Os01g15660
Os.27385.3.S1_at--769--451Chr01:8809817..8809841 (25 bp)
ATCTCAAACTTGCTGTGACTTAAAT
LOC_Os01g15660
Os.27385.3.S1_at--730--2511Chr01:8809823..8809847 (25 bp)
AACTTGCTGTGACTTAAATATCCTG
LOC_Os01g15660
Os.27385.3.S1_at--565--3631Chr01:8809825..8809849 (25 bp)
CTTGCTGTGACTTAAATATCCTGGA
LOC_Os01g15660
Os.27385.3.S1_at--375--4731Chr01:8809828..8809852 (25 bp)
GCTGTGACTTAAATATCCTGGATAA
LOC_Os01g15660
Os.27385.3.S1_at--218--3111Chr01:8809839..8809863 (25 bp)
AATATCCTGGATAAATCTTAGATTT
LOC_Os01g15660
Os.27385.3.S1_at--97--1211NONE
AGTTATTTATAGAAGCGATGGTCAA
NONE
Os.27385.3.S1_at--702--5411Chr01:8809875..8809899 (25 bp)
GAAGCGATGGTCAAAGATTTATCCA
NONE
Target Sequence 
CTCTATATTATATGCATCTCAAACTTGCTGTGACTTAAATATCCTGGATAAATCTTAGATTTAGTTATTTATAGAAGCGA
TGGTCAAAGATTTATCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27385.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis