Browse Element(s) Details


Os.27455.2.S1_at

Description gb:NM_189265.1
DB_XREF= gi:34905613
GEN=B1109A06.22
TID=Os.27455.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.27455 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (B1109A06.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (B1109A06.22), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g198402/1133 kDa secretory protein, putative, expressed
LOC_Os03g522101/11retrotransposon protein, putative, unclassified, expressed
LOC_Os03g366001/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g366841/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g174401/11retrotransposon protein, putative, unclassified
LOC_Os05g337501/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g490901/11retrotransposon protein, putative, unclassified
LOC_Os02g560801/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g19800NANA3+11125162..11126244hypothetical protein
LOC_Os03g19810OsAffx.3278.1.S1_at11/113+11132765..11134146hypothetical protein
LOC_Os03g19820OsAffx.25151.1.S1_at11/113+11135454..11135837hypothetical protein
LOC_Os03g19830OsAffx.12945.1.S1_at11/113+11137208..11137672hypothetical protein
LOC_Os03g19840Os.28566.1.S1_at11/113+11139901..1114352333 kDa secretory protein, putative, expressed
LOC_Os03g19840Os.27455.2.S1_at2/113+11139901..1114352333 kDa secretory protein, putative, expressed
LOC_Os03g19840Os.47130.4.A1_x_at2/113+11139901..1114352333 kDa secretory protein, putative, expressed
LOC_Os03g19850OsAffx.25152.1.S1_at11/113+11147034..11147501expressed protein
LOC_Os03g19860Os.54749.1.S2_at11/113+11148696..11150211expressed protein
LOC_Os03g19860Os.54749.1.S1_at11/113+11148696..11150211expressed protein
LOC_Os03g19870Os.14774.1.S1_s_at11/113+11150478..11156838XPA-binding protein 1, putative, expressed
LOC_Os03g19870Os.14774.2.S1_at10/113+11150478..11156838XPA-binding protein 1, putative, expressed
LOC_Os03g19880OsAffx.12947.1.S1_at11/113+11157118..11157489hypothetical protein
LOC_Os03g19890Os.12831.1.S1_at10/113+11159816..11162760ETC complex I subunit conserved region family protein, expressed
LOC_Os03g19900Os.56314.1.S1_at4/113+11163340..11168139AP2 domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27455.2.S1_at--1054--6151Chr01:17033317..17033341 (25 bp)
GAGGAGGTTTCGACCAACTCGCCGC
NONE
Os.27455.2.S1_at--493--1491Chr01:17033288..17033312 (25 bp)
AGCACCGCCAACTGCTAAAGTCGGA
NONE
Os.27455.2.S1_at--1131--3251Chr01:17033280..17033304 (25 bp)
CAACTGCTAAAGTCGGAGGGCCTGG
NONE
Os.27455.2.S1_at--502--6131Chr01:17033265..17033289 (25 bp)
GAGGGCCTGGCAGCCGACAAAGATA
NONE
Os.27455.2.S1_at--302--4111Chr01:17033251..17033275 (25 bp)
CGACAAAGATACGAGGAGCACCCCT
NONE
Os.27455.2.S1_at--438--8231Chr01:17033055..17033079 (25 bp)
GGCACGGACTGCTTTGATCGTCTGA
NONE
Os.27455.2.S1_at--384--5731Chr01:17033049..17033073 (25 bp)
GACTGCTTTGATCGTCTGAGACCGA
NONE
Os.27455.2.S1_at--1024--9391Chr01:17033038..17033062 (25 bp)
TCGTCTGAGACCGACGGATCGGACG
NONE
Os.27455.2.S1_at--164--451Chr01:17033022..17033045 (24 bp)
ATCGGACGGCTCACGCGAAGGAAGT
NONE
Os.27455.2.S1_at--572--93913Chr07:2609536..2609560 (25 bp)
TCGATCTGAGGAACGTCCGCGAGAG
NONE
Os.27455.2.S1_at--632--75156Chr10:16838189..16838210 (22 bp)
GTGGATCTGTGCGTGAAGGAATACA
NONE
Target Sequence 
GAGGAGGTTTCGACCAACTCGCCGCCGGCAGCACCGCCAACTGCTAAAGTCGGAGGGCCTGGCAGCCGACAAAGATACGA
GGAGCACCCCTCGGTCGACATCCTCGCCGAGGAGCCGGCGTCCACAAGCTGCAGGCTGCAGCGCGGACGAGCGAAGGAGC
CAAGGCGGCAGCGGCGGCGGCGGCGGCGGCGCGTGGGAAGAGGAGGGAGAGGCGGAGATAAGCCTGAGCGCGAGTGGGGA
CTGGATTTGGCGAGGTGATGGGGGCACGGACTGCTTTGATCGTCTGAGACCGACGGATCGGACGGCTCACGCGAAGGAAG
TGAGGTTCTTCGCCCTCGATCTGAGGAACGTCCGCGAGAGAGGAAGAGCACAAGACACGGGCGACGTAGACAGGTTCGGG
CCGCTGAGAAGCGTAACACCCTACTCCTATGTTCTGGTGGATCTGTGCGTGAAGGAATACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27455.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis