Browse Element(s) Details


Os.27487.1.A1_at

Description gb:CB674567
DB_XREF= gi:29678292
DB_XREF=OSJNEe09K19.r
CLONE=OSJNEe09K19
TID=Os.27487.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.27487 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T05069 (A.thaliana) T05069 hypothetical protein T6K21.10 - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g465202/11Peptidase family M20/M25/M40 containing protein, expressed
LOC_Os12g358301/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g46490Os.54049.1.S1_at11/112+28340113..28344302Protein phosphatase 2C containing protein, expressed
LOC_Os02g46500Os.57056.1.S1_at11/112+28346183..28347672U-box domain containing protein, expressed
LOC_Os02g46510Os.8929.1.S1_at11/112+28349689..28354639Clathrin coat assembly protein AP50, putative, expressed
LOC_Os02g46510Os.22806.1.S1_s_at11/112+28349689..28354639Clathrin coat assembly protein AP50, putative, expressed
LOC_Os02g46520Os.10393.1.S1_at11/112+28356958..28361034Peptidase family M20/M25/M40 containing protein, expressed
LOC_Os02g46520Os.27487.1.A1_at2/112+28356958..28361034Peptidase family M20/M25/M40 containing protein, expressed
LOC_Os02g46520Os.11796.1.S1_at1/112+28356958..28361034Peptidase family M20/M25/M40 containing protein, expressed
LOC_Os02g46530OsAffx.24755.1.S1_at11/112+28362729..28363235hypothetical protein
LOC_Os02g46540NANA2+28376885..28377103hypothetical protein
LOC_Os02g46550OsAffx.2980.1.S1_at11/112+28382185..28382508hypothetical protein
LOC_Os02g46560Os.51109.1.S1_at11/112+28384301..28387379Helix-loop-helix DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0008237molecular_functionmetallopeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27487.1.A1_at--785--9511Chr02:28359866..28359890 (25 bp)
TCTCTCATAATTTTGTCTCCACTTC
LOC_Os02g46520
Os.27487.1.A1_at--1123--7151Chr02:28359880..28359904 (25 bp)
GTCTCCACTTCTGCCGAATGTTGTT
LOC_Os02g46520
Os.27487.1.A1_at--328--4511NONE
GCCGAATGTTGTTTTAATTTGCCAG
NONE
Os.27487.1.A1_at--1024--191NONE
ATTTGCCAGTTGCATGTTGCCATTC
NONE
Os.27487.1.A1_at--895--6671NONE
GTTGCCATTCATACAGCAGGACTTT
NONE
Os.27487.1.A1_at--729--2151Chr12:21803671..21803696 (23 bp)
ACAGCAGGACTTTTGTAGTGAAGAA
LOC_Os12g35830
Os.27487.1.A1_at--133--4191NONE
CCCTGTATTTTGGAGTCGGGAGGCT
NONE
Os.27487.1.A1_at--336--10871NONE
TTGGAGTCGGGAGGCTTTCAAGCAT
NONE
Os.27487.1.A1_at--953--7851NONE
GGTATGGTTTACTCAAGACATCCCC
NONE
Os.27487.1.A1_at--1089--4191NONE
CCCGCAAAGAAGGAGTACTGTTTAT
NONE
Os.27487.1.A1_at--1089--2711NONE
AAGCAGATGTTTGATTTTTGTTTTG
NONE
Target Sequence 
TCTCTCATAATTTTGTCTCCACTTCTGCCGAATGTTGTTTTAATTTGCCAGTTGCATGTTGCCATTCATACAGCAGGACT
TTTGTAGTGAAGAAATTCCAAGAGTATGTCCATGATATAAATGAGACCATTGAAAAGCTTCCTACTCGGGGTCCGGTATT
TAAATATGTTTTTCCTGAGGAAACCCTCCGAGGAAGGCTTGAGATCCCTATTGATGAAGATATTATGAATGGGGGGCCCT
GTATTTTGGAGTCGGGAGGCTTTCAAGCATTATGCAAAGCAACTGAGGAAATTGTCGGCCACGTGGACCCATATTCCATT
ACTGGGAGTTTCCCCCTGATTAGGGAATTCCAGGATGAAGGGTTTGATGTTCAGACTGCGGGGTATGGTTTACTCAAGAC
ATCCCCCGCAAAGAAGGAGTACTGTTTATTTTCAGATATGGCCCAAGGCTTTCAAGTATTTTTGAGCATCATTTCCCAGT
TGGAAGCAGATGTTTGATTTTTGTTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27487.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis