Browse Element(s) Details


Os.27490.2.S1_at

Description gb:NM_189262.1
DB_XREF= gi:34905607
GEN=B1109A06.19
TID=Os.27490.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.27490 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (B1109A06.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (B1109A06.19), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g298003/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g29760NANA1+17000663..17005278retrotransposon protein, putative, unclassified, expressed
LOC_Os01g29770NANA1+17010747..17011072hypothetical protein
LOC_Os01g29780Os.31845.2.S1_x_at1/111+17014563..17016473retrotransposon protein, putative, unclassified
LOC_Os01g29790OsAffx.7834.1.S1_at10/111+17016884..17020481hypothetical protein
LOC_Os01g29800Os.27490.2.S1_at3/111+17025093..17025710hypothetical protein
LOC_Os01g29800OsAffx.11234.1.S1_x_at1/111+17025093..17025710hypothetical protein
LOC_Os01g29820Os.27455.1.S1_at11/111+17034358..17039085expressed protein
LOC_Os01g29820Os.27455.1.S1_x_at11/111+17034358..17039085expressed protein
LOC_Os01g29820OsAffx.11259.1.S1_at8/111+17034358..17039085expressed protein
LOC_Os01g29820Os.809.1.A1_at6/111+17034358..17039085expressed protein
LOC_Os01g29830Os.52371.1.S1_at11/111+17043536..17046240expressed protein
LOC_Os01g29840Os.18337.1.S1_x_at11/111+17047639..17049468no apical meristem, putative, expressed
LOC_Os01g29840Os.18337.1.S1_s_at11/111+17047639..17049468no apical meristem, putative, expressed
LOC_Os01g29840Os.18337.2.S1_at11/111+17047639..17049468no apical meristem, putative, expressed
LOC_Os01g29840Os.18337.1.S1_at9/111+17047639..17049468no apical meristem, putative, expressed
LOC_Os01g29840Os.18337.2.S1_x_at9/111+17047639..17049468no apical meristem, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27490.2.S1_at--950--892Chr06:26828988..26829010 (22 bp)
AGGCGTCGCGGCATGGCGAGGAACG
NONE
Os.27490.2.S1_at--766--1531Chr01:17025269..17025293 (25 bp)
AGCATGGCGTTTGCAGCGGGACTCA
LOC_Os01g29800
Os.27490.2.S1_at--221--6031Chr01:17025230..17025254 (25 bp)
GAGATGGTTACAACGGCTCCCGGCA
LOC_Os01g29800
Os.27490.2.S1_at--25--5751Chr01:17025079..17025177 (25 bp)
GACGGCGCACCTTGCGGTGGCTATT
NONE
Os.27490.2.S1_at--927--5491Chr01:17025051..17025075 (25 bp)
GGAAACCAAGCGAAGGCCGGGTGCG
NONE
Os.27490.2.S1_at--63--4631Chr01:17025014..17025038 (25 bp)
GCGATGCTAGTGGTGCGAGCGGCGC
NONE
Os.27490.2.S1_at--1092--4931Chr01:17024911..17024935 (25 bp)
GCTTGGCTCAGCTCGGGCAGTCTGC
NONE
Os.27490.2.S1_at--693--8491Chr01:17024875..17024899 (25 bp)
TGGCAGGCGGCTGAATAGCGCCGGT
NONE
Os.27490.2.S1_at--100--8631Chr01:17024533..17024557 (25 bp)
TGGGACTCCGGCAATGTGGGCGACT
NONE
Os.27490.2.S1_at--619--10751NONE
TTGAGTGGAGTTCTATCCACCATCC
NONE
Os.27490.2.S1_at--671--4313Chr11:6768596..6768620 (25 bp)
CCTTCTCACCTCTCGAGAAGTTGAT
NONE
Target Sequence 
AGGCGTCGCGGCATGGCGAGGAACGCCGGCCGAGCATGGCGTTTGCAGCGGGACTCACCGGGGAGCGAGGGGAGATGGTT
ACAACGGCTCCCGGCAGCAGTGAGGTGGTGGCCGAGGATCTCCTTGCCCTTGCGGAGCCGAAGGAGGTGACGGCGCACCT
TGCGGTGGCTATTTGGGGAAACCAAGCGAAGGCCGGGTGCGCGGTGAGGTGTGGCGATGCTAGTGGTGCGAGCGGCGCGG
CACGGGGACTGCGGCTTGGCTCAGCTCGGGCAGTCTGCGGGAGCAGCGGTGGCAGGCGGCTGAATAGCGCCGGTGAGCGG
CGGAAGAGCTCGGGGAGGGGAGAACGTGCCCGGACGGGGCGGCAACGGGCGGCGGCGTGGGACTCCGGCAATGTGGGCGA
CTGGGGCGGCTCGGCGCCGATTTTCTCGGGGAGAGTGGGGGATTTGAGTGGAGTTCTATCCACCATCCATTGTATTCCCA
AGGATAGCTTCCCGCCACTGGTCGTCATGGTTTTCTGGGGTCTACCCCTTCTCACCTCTCGAGAAGTTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27490.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis