Browse Element(s) Details


Os.27499.2.S1_a_at

Description gb:AK064856.1
DB_XREF= gi:32974874
TID=Os.27499.2
CNT=25
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.27499 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-038-F05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000H11, full insert sequence.
FL= gb:AK064856.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3965011/11phytanoyl-CoA dioxygenase, putative, expressed
LOC_Os03g5004011/11phytanoyl-CoA dioxygenase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g39590Os.54212.1.S1_at11/115+23164500..23166848AP2 domain containing protein, expressed
LOC_Os05g39600Os.53362.1.S1_at11/115+23167929..23171197Sodium/hydrogen exchanger family protein, expressed
LOC_Os05g39600Os.53362.2.S1_at6/115+23167929..23171197Sodium/hydrogen exchanger family protein, expressed
LOC_Os05g39610Os.10500.1.S1_at11/115+23171743..23174288Exo70 exocyst complex subunit family protein, expressed
LOC_Os05g39620OsAffx.21171.3.S1_x_at4/115+23179346..23185029retrotransposon protein, putative, unclassified
LOC_Os05g39620OsAffx.21171.5.S1_at3/115+23179346..23185029retrotransposon protein, putative, unclassified
LOC_Os05g39620OsAffx.21171.5.S1_x_at3/115+23179346..23185029retrotransposon protein, putative, unclassified
LOC_Os05g39620OsAffx.21171.4.S1_x_at2/115+23179346..23185029retrotransposon protein, putative, unclassified
LOC_Os05g39620OsAffx.22711.4.S1_at1/115+23179346..23185029retrotransposon protein, putative, unclassified
LOC_Os05g39630OsAffx.29284.1.S1_x_at1/115+23187528..23188130hypothetical protein
LOC_Os05g39640OsAffx.15029.1.S1_at11/115+23189008..23189486hypothetical protein
LOC_Os05g39650Os.27499.2.S1_a_at11/115+23190400..23193314phytanoyl-CoA dioxygenase, putative, expressed
LOC_Os05g39650Os.23310.1.A1_s_at4/115+23190400..23193314phytanoyl-CoA dioxygenase, putative, expressed
LOC_Os05g39650Os.23310.1.A1_x_at1/115+23190400..23193314phytanoyl-CoA dioxygenase, putative, expressed
LOC_Os05g39660OsAffx.4562.1.S1_at10/115+23199922..23201170hypothetical protein
LOC_Os05g39670Os.6752.1.S1_at9/115+23201427..23202535PRA1 family protein, expressed
LOC_Os05g39680OsAffx.27242.1.S1_x_at10/115+23204757..23213649PX domain containing protein, expressed
LOC_Os05g39680Os.23700.1.A1_at6/115+23204757..23213649PX domain containing protein, expressed
LOC_Os05g39690Os.9824.1.S2_at6/115+23214329..23217004Aldose reductase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0048244molecular_functionphytanoyl-CoA dioxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27499.2.S1_a_at--475--5032Chr05:23191711..23191735 (25 bp)
GCAGTTATTCAATCTATGTACATCT
LOC_Os05g39650
Os.27499.2.S1_a_at--1136--7012Chr05:23191613..23191718 (25 bp)
GTACATCTTTAAGCAACCAGGCATT
LOC_Os05g39650
Os.27499.2.S1_a_at--1009--7532Chr05:23191520..23191544 (25 bp)
GTGGCTTGCACTCGAAGATGCGACA
LOC_Os05g39650
Os.27499.2.S1_a_at--87--6332Chr05:23191504..23191528 (25 bp)
GATGCGACAAAAACGAATGGTTGCC
LOC_Os05g39650
Os.27499.2.S1_a_at--258--8652Chr05:23191477..23191501 (25 bp)
TGGGCAATTCCTGGATCACATAAAA
LOC_Os05g39650
Os.27499.2.S1_a_at--634--6472Chr05:23191324..23191348 (25 bp)
GATACTCATTTTGATCATCCTTCGC
LOC_Os05g39650
Os.27499.2.S1_a_at--1025--9232Chr05:23191307..23191331 (25 bp)
TCCTTCGCCAACCTATGATCTGAAA
LOC_Os05g39650
Os.27499.2.S1_a_at--205--2852Chr05:23191261..23191285 (25 bp)
AAGTCAGGTGATTTGGTGGTTATTC
LOC_Os05g39650
Os.27499.2.S1_a_at--492--10252Chr05:23191250..23191274 (25 bp)
TTTGGTGGTTATTCATGGAGATCTT
LOC_Os05g39650
Os.27499.2.S1_a_at--319--652Chr05:23191103..23191127 (25 bp)
ATGCACTGAGCTTACATGTAATTGA
LOC_Os05g39650
Os.27499.2.S1_a_at--498--312Chr05:23191079..23191103 (25 bp)
ATACCGAAGGATGTGAATGGTCCAA
LOC_Os05g39650
Target Sequence 
GCAGTTATTCAATCTATGTACATCTTTAAGCAACCAGGCATTGGTGGCGAGGNTGGTNCCACACCAGGATAATACATTCC
TATATACANACCCTCCATCNTGCACAGGGNTGTGGCTTGCACTCGAAGATGCGACAAAAACGAATGGTTGCCTATGGGCA
ATTCCTGGATCACATAAAAATGGTCTGAAAAGGCGAATGATCAGAGATGAAAATGATACTCATTTTGATCATCCTTCGCC
AACCTATGATCTGAAAGAATTTGTGCCATTAGAAGTAAAGTCAGGTGATTTGGTGGTTATTCATGGAGATCTTGTACACC
AGAGCTTTGAAAATCTTTCTCTGGTGTCAAGACATGCACTGAGCTTACATGTAATTGATACCGAAGGATGTGAATGGTCC
AA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27499.2.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis