Browse Element(s) Details

Os.27507.1.S1_at

Description

gb:AK109673.1
DB_XREF= gi:32994882
TID=Os.27507.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27507 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-145-B05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-145-B05, full insert sequence.
FL= gb:AK109673.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g35700	10/11	Reticuline oxidase precursor, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g35650	Os.53599.1.S1_at	11/11	6	+	20807197..20809008	Reticuline oxidase precursor, putative, expressed
LOC_Os06g35650	OsAffx.11451.4.S1_x_at	1/11	6	+	20807197..20809008	Reticuline oxidase precursor, putative, expressed
LOC_Os06g35660	OsAffx.5020.1.S1_at	11/11	6	+	20811524..20813110	Reticuline oxidase precursor, putative
LOC_Os06g35670	Os.9858.1.S1_at	11/11	6	+	20820744..20824188	expressed protein
LOC_Os06g35670	Os.9858.2.S1_x_at	3/11	6	+	20820744..20824188	expressed protein
LOC_Os06g35690	OsAffx.20313.1.S1_x_at	4/11	6	+	20828124..20828847	hypothetical protein
LOC_Os06g35700	Os.27507.1.S1_at	10/11	6	+	20831523..20833494	Reticuline oxidase precursor, putative, expressed
LOC_Os06g35700	OsAffx.11451.4.S1_x_at	1/11	6	+	20831523..20833494	Reticuline oxidase precursor, putative, expressed
LOC_Os06g35700	Os.47789.1.A1_at	1/11	6	+	20831523..20833494	Reticuline oxidase precursor, putative, expressed
LOC_Os06g35710	OsAffx.22947.1.S1_x_at	11/11	6	+	20837753..20844117	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g35710	OsAffx.22947.2.S1_x_at	4/11	6	+	20837753..20844117	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g35710	OsAffx.22947.3.S1_x_at	3/11	6	+	20837753..20844117	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g35710	OsAffx.22947.5.S1_x_at	3/11	6	+	20837753..20844117	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g35720	NA	NA	6	+	20846326..20848652	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g35730	Os.38797.1.S1_at	3/11	6	+	20850303..20854493	60S ribosomal protein L11-1, putative, expressed
LOC_Os06g35730	OsAffx.25258.2.S1_x_at	2/11	6	+	20850303..20854493	60S ribosomal protein L11-1, putative, expressed
LOC_Os06g35730	OsAffx.25258.2.S1_at	1/11	6	+	20850303..20854493	60S ribosomal protein L11-1, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0009055	molecular_function	electron carrier activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.27507.1.S1_at--846--211	1	Chr06:20832016..20832040 (25 bp)	ACAGGGACCTGGACCTCGGCGAGAA	LOC_Os06g35700
Os.27507.1.S1_at--479--401	1	Chr06:20831973..20831997 (25 bp)	CGTCAGCAGCTACGACGCCGGCAAG	LOC_Os06g35700
Os.27507.1.S1_at--979--577	1	Chr06:20831827..20831851 (25 bp)	GACGAGCCAATTCAAATGTAGCATG	LOC_Os06g35700
Os.27507.1.S1_at--123--971	1	Chr06:20831816..20831840 (25 bp)	TCAAATGTAGCATGGCCTACTCCCT	LOC_Os06g35700
Os.27507.1.S1_at--177--45	1	Chr06:20831774..20831798 (25 bp)	ATCTAGTGCCGGATATAATTAGGAA	LOC_Os06g35700
Os.27507.1.S1_at--320--705	1	Chr06:20831673..20831697 (25 bp)	GTAAAAATCTTTGGTCATGTGTAAA	LOC_Os06g35700
Os.27507.1.S1_at--397--963	1	Chr06:20831659..20831683 (25 bp)	TCATGTGTAAAGATGCGTGGTGTAT	LOC_Os06g35700
Os.27507.1.S1_at--674--797	1	Chr06:20831554..20831578 (25 bp)	GGATCGATGTACTATCTTTCACATA	LOC_Os06g35700
Os.27507.1.S1_at--805--701	1	Chr06:20831546..20831570 (25 bp)	GTACTATCTTTCACATAAGCTGAGC	LOC_Os06g35700
Os.27507.1.S1_at--432--269	1	Chr06:20831530..20831554 (25 bp)	AAGCTGAGCTTATTGCGTGCTCCAT	LOC_Os06g35700
Os.27507.1.S1_at--619--489	1	Chr06:20831523..20831547 (25 bp)	GCTTATTGCGTGCTCCATTCGTTGT	NONE

Target Sequence

ACAGGGACCTGGACCTCGGCGAGAACGTGGTCGGCGCCGGCGGCGTCAGCAGCTACGACGCCGGCAAGGTGTGGGGGGAG
AAGTACTTCAGGGGGAACTACCAGCGGCTCGCCATGGCCAAGGCGCAGATCGACGCCGACGACTACTTCAGGAACGAGCA
GAGCATCCCGCCACTTGTCGCCGGAAAATGACGAGCCAATTCAAATGTAGCATGGCCTACTCCCTCCGTCACATAAAAAA
TAATCTAGTGCCGGATATAATTAGGAAGTATCAGATTTAATACTAAATTAGTTTTTTATGAGATGGAGGGAGTAGTGCAT
GGCAGNCAGTCAAACTAATAGCTGTAAAAATCTTTGGTCATGTGTAAAGATGCGTGGTGTATAGGGTAGCTACNCCGTCT
ATATGTTTGAAAATTCATCNCTGTACTTATCTTTTTTTTCTTCCAATTGTATTTTGTGGTNNGGATCGATGTACTATCTT
TCACATAAGCTGAGCTTATTGCGTGCTCCATTCGTTGT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis