Browse Element(s) Details


Os.27520.8.S1_x_at

Description gb:AK104628.1
DB_XREF= gi:32989837
TID=Os.27520.8
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27520 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0020E23.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-310-B11, full insert sequence.
FL= gb:AK104628.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0856411/11expressed protein
LOC_Os03g359702/11hypothetical protein
LOC_Os11g187801/11hypothetical protein
LOC_Os02g174401/11hypothetical protein
LOC_Os03g419501/11hypothetical protein
LOC_Os11g221701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g08500NANA12+4309820..4312490hypothetical protein
LOC_Os12g08510OsAffx.16451.1.A1_x_at1/1112+4313138..4319736retrotransposon protein, putative, unclassified
LOC_Os12g08510OsAffx.22699.1.S1_x_at1/1112+4313138..4319736retrotransposon protein, putative, unclassified
LOC_Os12g08510OsAffx.8279.1.S1_at1/1112+4313138..4319736retrotransposon protein, putative, unclassified
LOC_Os12g08510Os.52731.1.S1_at1/1112+4313138..4319736retrotransposon protein, putative, unclassified
LOC_Os12g08510OsAffx.7789.1.S1_x_at1/1112+4313138..4319736retrotransposon protein, putative, unclassified
LOC_Os12g08520NANA12+4320513..4322774transposon protein, putative, Mutator sub-class
LOC_Os12g08530OsAffx.27108.2.S1_s_at11/1112+4323450..4324050GRF zinc finger family protein
LOC_Os12g08540NANA12+4329181..4329453hypothetical protein
LOC_Os12g08550Os.46707.1.A1_at2/1112+4335994..4336890hypothetical protein
LOC_Os12g08550Os.55601.1.S1_at1/1112+4335994..4336890hypothetical protein
LOC_Os12g08564Os.27520.8.S1_x_at11/1112+4336664..4353235expressed protein
LOC_Os12g08564OsAffx.7527.1.S1_x_at11/1112+4336664..4353235expressed protein
LOC_Os12g08564Os.10255.1.S1_s_at9/1112+4336664..4353235expressed protein
LOC_Os12g08564Os.46314.2.S1_x_at6/1112+4336664..4353235expressed protein
LOC_Os12g08564Os.47114.1.S1_x_at3/1112+4336664..4353235expressed protein
LOC_Os12g08564OsAffx.22896.1.S1_x_at1/1112+4336664..4353235expressed protein
LOC_Os12g08564Os.38269.1.S1_x_at1/1112+4336664..4353235expressed protein
LOC_Os12g08564OsAffx.26987.1.S1_at1/1112+4336664..4353235expressed protein
LOC_Os12g08564OsAffx.32036.1.S1_at1/1112+4336664..4353235expressed protein
LOC_Os12g08564Os.51910.1.S1_x_at1/1112+4336664..4353235expressed protein
LOC_Os12g08580OsAffx.16318.1.S1_x_at1/1112+4354378..4355340retrotransposon protein, putative, unclassified
LOC_Os12g08590NANA12+4365579..4368331retrotransposon protein, putative, unclassified
LOC_Os12g08600NANA12+4372468..4373852retrotransposon protein, putative, unclassified
LOC_Os12g08610NANA12+4375208..4377532retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os12g08620NANA12+4377958..4382102retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27520.8.S1_x_at--297--4072Chr12:4347277..4347301 (25 bp)
CGAGGGCCACATGATCGACATCTGC
LOC_Os12g08564
Os.27520.8.S1_x_at--785--3792Chr12:4347391..4347415 (25 bp)
CTCGCTGACGTCATCGCTTGTGGAG
LOC_Os12g08564
Os.27520.8.S1_x_at--129--6051Chr12:4347434..4347458 (25 bp)
GAGATCACATCCAAGCACGCGGCTA
LOC_Os12g08564
Os.27520.8.S1_x_at--1013--9233Chr12:4347507..4347531 (25 bp)
TCCTTGCGTGCATGAGGCTGGCATA
LOC_Os12g08564
Os.27520.8.S1_x_at--1137--8492Chr12:4347525..4347549 (25 bp)
TGGCATATCCCGATCTGGACCTTAA
LOC_Os12g08564
Os.27520.8.S1_x_at--298--4751Chr12:4347572..4347596 (25 bp)
GCTGATGACGCACGCAAGGATACGA
LOC_Os12g08564
Os.27520.8.S1_x_at--25--6091Chr12:4347644..4347668 (25 bp)
GAGTAGGACATTTGTTTTCCCTTGT
LOC_Os12g08564
Os.27520.8.S1_x_at--464--9953Chr12:4347668..4347692 (25 bp)
TACCCCTTAACCTTCATGCTGTAAA
LOC_Os12g08564
Os.27520.8.S1_x_at--399--7051Chr12:4347688..4347712 (25 bp)
GTAAAACTTGTCTATGGATCCGAAC
LOC_Os12g08564
Os.27520.8.S1_x_at--1054--7951Chr12:4347703..4347727 (25 bp)
GGATCCGAACTATTCTTATCTGAAC
LOC_Os12g08564
Os.27520.8.S1_x_at--152--2211Chr12:4347726..4347750 (25 bp)
ACAACTGTCTGATGGTATTTCTTAA
LOC_Os12g08564
Target Sequence 
CGAGGGCCACATGATCGACATCTGCGGTTCGCTGCGAACGTCATTCACCAGCCTGCACCAACTCGCCGGGGAGTGTAGTG
TCACGACTACCATCCCGGCGCATCCCGATGAGTTCTCGCTGACGTCATCGCTTGTGGAGCTGGCTACGGCGATGGAGGAG
ATCACATCCAAGCACGCGGCTAGGATCGGGGAGGAGACGTCCAACGGCATCTACACCGGGGCGTGCCATGTCCTTGCGTG
CATGAGGCTGGCATATCCCGATCTGGACCTTAAGAAGGCTTTGGATCTGGGGGCCGCTGATGACGCACGCAAGGATACGA
TGGAAGAAGTCGGTGACTTGGGGGAGTCCGTCCTCCCCCTTTTTTGAAGAGTAGGACATTTGTTTTCCCTTGTACCCCTT
AACCTTCATGCTGTAAAACTTGTCTATGGATCCGAACTATTCTTATCTGAACAACTGTCTGATGGTATTTCTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27520.8.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis