Browse Element(s) Details


Os.27602.1.S1_at

Description gb:AK060919.1
DB_XREF= gi:32970937
TID=Os.27602.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.27602 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-304-G11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-035-H01, full insert sequence.
FL= gb:AK104538.1 gb:AK064777.1 gb:AK060919.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0267011/11UDP-galactose transporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g02620NANA3+944590..944937hypothetical protein
LOC_Os03g02630Os.40360.1.S1_at6/113+946568..949140hypothetical protein
LOC_Os03g02630Os.40360.1.S1_x_at4/113+946568..949140hypothetical protein
LOC_Os03g02630Os.40855.5.S1_x_at3/113+946568..949140hypothetical protein
LOC_Os03g02640Os.52411.1.S1_at11/113+952949..956757expressed protein
LOC_Os03g02650Os.55877.1.S1_at11/113+957161..958115AP2 domain containing protein, expressed
LOC_Os03g02660Os.53330.1.S1_at11/113+964116..968105expressed protein
LOC_Os03g02660OsAffx.12144.2.A1_s_at11/113+964116..968105expressed protein
LOC_Os03g02660OsAffx.26471.1.A1_at1/113+964116..968105expressed protein
LOC_Os03g02670Os.27602.1.S1_at11/113+969463..973054UDP-galactose transporter, putative, expressed
LOC_Os03g02670Os.7088.1.S1_at1/113+969463..973054UDP-galactose transporter, putative, expressed
LOC_Os03g02680Os.11723.1.S1_s_at11/113+975945..979582Cell division control protein 2 homolog 1, putative, expressed
LOC_Os03g02680Os.11723.2.S1_s_at11/113+975945..979582Cell division control protein 2 homolog 1, putative, expressed
LOC_Os03g02680Os.11723.3.S1_at11/113+975945..979582Cell division control protein 2 homolog 1, putative, expressed
LOC_Os03g02680Os.11723.4.S1_x_at10/113+975945..979582Cell division control protein 2 homolog 1, putative, expressed
LOC_Os03g02690OsAffx.3115.1.S1_x_at11/113+982673..985614Dihydrodipicolinate reductase, C-terminus family protein, expressed
LOC_Os03g02690Os.49168.1.S1_s_at11/113+982673..985614Dihydrodipicolinate reductase, C-terminus family protein, expressed
LOC_Os03g02700OsAffx.12714.1.S1_x_at11/113+986728..988856GMC oxidoreductase family protein
LOC_Os03g02700OsAffx.12714.1.S1_at11/113+986728..988856GMC oxidoreductase family protein
LOC_Os03g02710Os.20342.1.S1_at11/113+993651..998551Hydroxymethylglutaryl-CoA synthase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005354molecular_functiongalactose transporter activity
GO:0015165molecular_functionpyrimidine nucleotide sugar transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27602.1.S1_at--792--8111Chr03:971919..972412 (25 bp)
GGACTGCATGTTCCCAGCATATGTA
LOC_Os03g02670
Os.27602.1.S1_at--1076--4951Chr03:972404..972428 (25 bp)
GCATATGTACGTGTACGCCGTGCTG
LOC_Os03g02670
Os.27602.1.S1_at--1081--6691Chr03:972431..972455 (25 bp)
GTTCGAGGCGATGGCCACGTTCGTC
LOC_Os03g02670
Os.27602.1.S1_at--604--4511Chr03:972495..972612 (25 bp)
GCCGCAACAACAGCTATGGTGACGA
LOC_Os03g02670
Os.27602.1.S1_at--771--8711Chr03:972640..972664 (25 bp)
TGTCGTACCTGATATTCACCAAGCC
LOC_Os03g02670
Os.27602.1.S1_at--346--4771Chr03:972692..972716 (25 bp)
GCTGCTGATCTCCATGGGCATCGTG
LOC_Os03g02670
Os.27602.1.S1_at--161--511Chr03:972711..972735 (25 bp)
ATCGTGCTGAAGCTCCTGCTGGAGA
LOC_Os03g02670
Os.27602.1.S1_at--451--1431Chr03:972733..972757 (25 bp)
AGAACAAGGAGAACGTCCCGCGCAG
LOC_Os03g02670
Os.27602.1.S1_at--1085--1391Chr03:972769..972793 (25 bp)
AGACGGTGCAGCATTGGGACGACAA
LOC_Os03g02670
Os.27602.1.S1_at--779--5971Chr03:972822..972846 (25 bp)
GAGAAAGCTCCCTTGGTATGACCAT
LOC_Os03g02670
Os.27602.1.S1_at--751--6051Chr03:972976..973000 (25 bp)
GAGATTGTTTTGTGGGTCTATGCCA
LOC_Os03g02670
Target Sequence 
GGACTGCATGTTCCCAGCATATGTACGTGTACGCCGTGCTGGTGTTCGAGGCGATGGCCACGTTCGTCGGCCAGGTCTCG
GTGCTCTCCCTCATCGCGCTCTTCGGCGCCGCAACAACAGCTATGGTGACGACGGCGAGGAAGGCGGTGACCCTGCTCCT
GTCGTACCTGATATTCACCAAGCCATTGACGGAGCAGCACGTCACCGGGCTGCTGCTGATCTCCATGGGCATCGTGCTGA
AGCTCCTGCTGGAGAACAAGGAGAACGTCCCGCGCAGGCAGGTGAGGAAGACGGTGCAGCATTGGGACGACAAGCAGCGG
GAGATCAGAGAAGTAGAAGAGGAGAAAGCTCCCTTGGTATGACCATTTTTTTAGTTGGCCCAAGCAAAGGCTGAACGAAT
CACAATACACCAATTGCAGGACAGGATAGAAAATGCTCAAAAAAGAGTAACAACCCCTCTCCCTCTGTCTCTCTCATGTA
ATGTTTTGCTGTTGTGAGATTGTTTTGTGGGTCTATGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27602.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis