Browse Element(s) Details


Os.27640.1.A1_s_at

Description gb:AK069589.1
DB_XREF= gi:32979613
TID=Os.27640.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27640 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023022C08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023022C08, full insert sequence.
FL= gb:AK069589.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3668011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g36660OsAffx.19991.1.S1_at11/1112+22414216..22415713MATE efflux family protein
LOC_Os12g36670Os.49486.1.S1_at11/1112+22424316..22428387Leucine Rich Repeat family protein, expressed
LOC_Os12g36680Os.27640.1.A1_s_at11/1112+22432801..22435714expressed protein
LOC_Os12g36690Os.54062.1.S1_at11/1112+22443509..22447723NB-ARC domain containing protein, expressed
LOC_Os12g36690Os.28429.3.S1_x_at1/1112+22443509..22447723NB-ARC domain containing protein, expressed
LOC_Os12g36700OsAffx.7811.1.S1_at10/1112+22448593..22449262hypothetical protein
LOC_Os12g36710OsAffx.7812.1.S1_at11/1112+22450130..22451043hypothetical protein
LOC_Os12g36710Os.29932.2.S1_x_at1/1112+22450130..22451043hypothetical protein
LOC_Os12g36710Os.54071.1.S1_at1/1112+22450130..22451043hypothetical protein
LOC_Os12g36720Os.28429.3.S1_at11/1112+22455301..22458833NB-ARC domain containing protein, expressed
LOC_Os12g36720Os.28429.3.S1_x_at11/1112+22455301..22458833NB-ARC domain containing protein, expressed
LOC_Os12g36720Os.28429.1.S1_at9/1112+22455301..22458833NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27640.1.A1_s_at--1151--5391Chr12:22435113..22435137 (25 bp)
GAAGCTAGAGCAAGATTGCACCAAC
LOC_Os12g36680
Os.27640.1.A1_s_at--992--1351Chr12:22435119..22435143 (25 bp)
AGAGCAAGATTGCACCAACGGTGAG
LOC_Os12g36680
Os.27640.1.A1_s_at--928--2811Chr12:22435124..22435148 (25 bp)
AAGATTGCACCAACGGTGAGCTGAA
LOC_Os12g36680
Os.27640.1.A1_s_at--1054--5071Chr12:22435130..22435154 (25 bp)
GCACCAACGGTGAGCTGAATGAGCA
LOC_Os12g36680
Os.27640.1.A1_s_at--692--4332Chr12:22435202..22435226 (25 bp)
CCATGGCTCGTAGGCCTGATTCTAT
LOC_Os12g36680
Os.27640.1.A1_s_at--24--8492Chr12:22435205..22435229 (25 bp)
TGGCTCGTAGGCCTGATTCTATGGC
LOC_Os12g36680
Os.27640.1.A1_s_at--500--6932Chr12:22435211..22435235 (25 bp)
GTAGGCCTGATTCTATGGCCATTCT
LOC_Os12g36680
Os.27640.1.A1_s_at--63--4472Chr12:22435215..22435239 (25 bp)
GCCTGATTCTATGGCCATTCTTGCT
LOC_Os12g36680
Os.27640.1.A1_s_at--317--4312Chr12:22435281..22435305 (25 bp)
CCTATATGTTCCTCTGCAAGCAACA
LOC_Os12g36680
Os.27640.1.A1_s_at--1132--6693Chr12:22435288..22435312 (25 bp)
GTTCCTCTGCAAGCAACATGATCTT
LOC_Os12g36680
Os.27640.1.A1_s_at--41--6312Chr12:22435315..22435339 (25 bp)
GATGAACCCACGGTAAGTTCGCAAA
LOC_Os12g36680
Target Sequence 
GAAGCTAGAGCAAGATTGCACCAACGGTGAGCTGAATGAGCATGACCTGACCAAAGCAGGAGCTACCGCAATGGGAGGAG
CTGTTTTGNCCATGGCTCGTAGGCCTGATTCTATGGCCATTCTTGCTNTTATAGTTGCAGTTNCCATCGCGATAACTATC
GTCGTGCNCCTATATGTTCCTCTGCAAGCAACATGATCTTTAGATGAACCCACGGTAAGTTCGCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27640.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis