Browse Element(s) Details

Os.27678.1.S1_at

Description

gb:AK068880.1
DB_XREF= gi:32978905
TID=Os.27678.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.27678 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013170A10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013170A10, full insert sequence.
FL= gb:AK068880.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g21470	11/11	Poly polymerase central domain containing protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g21430	Os.40855.2.S1_x_at	9/11	6	+	12383026..12386358	hypothetical protein
LOC_Os06g21430	Os.40360.1.S1_at	9/11	6	+	12383026..12386358	hypothetical protein
LOC_Os06g21430	Os.40360.1.S1_x_at	6/11	6	+	12383026..12386358	hypothetical protein
LOC_Os06g21430	Os.40855.5.S1_x_at	3/11	6	+	12383026..12386358	hypothetical protein
LOC_Os06g21430	Os.40855.4.S1_x_at	2/11	6	+	12383026..12386358	hypothetical protein
LOC_Os06g21430	Os.40855.4.S1_at	1/11	6	+	12383026..12386358	hypothetical protein
LOC_Os06g21440	OsAffx.21161.1.S1_at	1/11	6	+	12391026..12395775	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g21450	OsAffx.13200.2.S1_x_at	11/11	6	+	12396662..12397075	retrotransposon protein, putative, unclassified
LOC_Os06g21460	OsAffx.15536.1.S1_x_at	11/11	6	+	12399399..12400852	retrotransposon protein, putative, unclassified
LOC_Os06g21470	Os.27678.1.S1_at	11/11	6	+	12402832..12409354	Poly polymerase central domain containing protein, expressed
LOC_Os06g21470	Os.21194.1.S1_at	10/11	6	+	12402832..12409354	Poly polymerase central domain containing protein, expressed
LOC_Os06g21480	Os.18173.1.S1_at	11/11	6	+	12411526..12414342	60S ribosomal protein L31, putative, expressed
LOC_Os06g21489	NA	NA	6	+	12415302..12417472	transposon protein, putative, Pong sub-class
LOC_Os06g21498	NA	NA	6	+	12417884..12419227	transposon protein, putative, Pong sub-class
LOC_Os06g21507	NA	NA	6	+	12420569..12421912	transposon protein, putative, Pong sub-class
LOC_Os06g21516	NA	NA	6	+	12422324..12424494	transposon protein, putative, Pong sub-class
LOC_Os06g21530	Os.2106.1.S2_at	2/11	6	+	12425185..12425832	expressed protein
LOC_Os06g21540	OsAffx.27753.1.S1_at	11/11	6	+	12429001..12429372	inhibitor I family protein
LOC_Os06g21550	OsAffx.15537.1.S1_at	11/11	6	+	12430771..12431519	expressed protein
LOC_Os06g21560	Os.33150.1.S1_at	11/11	6	+	12433085..12436479	CDK5RAP3, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0016779	molecular_function	nucleotidyltransferase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.27678.1.S1_at--819--727	1	Chr06:12406969..12406993 (25 bp)	GTCCAACAAATGGATTGGGCCATCT	LOC_Os06g21470
Os.27678.1.S1_at--693--865	1	Chr06:12406984..12407008 (25 bp)	TGGGCCATCTTTTAGATAGTTCTTG	LOC_Os06g21470
Os.27678.1.S1_at--323--649	1	Chr06:12406998..12407022 (25 bp)	GATAGTTCTTGTAAAAAACCAGCAG	LOC_Os06g21470
Os.27678.1.S1_at--682--241	1	Chr06:12407010..12407034 (25 bp)	AAAAAACCAGCAGACATCATTGTAA	LOC_Os06g21470
Os.27678.1.S1_at--531--219	1	Chr06:12407043..12407067 (25 bp)	ACAAATTTCTCTTCAGCTGTCCTAG	LOC_Os06g21470
Os.27678.1.S1_at--314--1059	1	Chr06:12407049..12407073 (25 bp)	TTCTCTTCAGCTGTCCTAGCAGTAC	LOC_Os06g21470
Os.27678.1.S1_at--1105--631	1	Chr06:12407076..12407100 (25 bp)	GATGAACTTGATGAGCTGGATTCTC	LOC_Os06g21470
Os.27678.1.S1_at--888--161	1	Chr06:12407089..12407113 (25 bp)	AGCTGGATTCTCATCAAGTGAAGGT	LOC_Os06g21470
Os.27678.1.S1_at--342--653	1	Chr06:12407124..12407148 (25 bp)	GATTTAACTGCAGTAGATCAAGGAT	LOC_Os06g21470
Os.27678.1.S1_at--671--645	1	Chr06:12407139..12407163 (25 bp)	GATCAAGGATTATCTTTGGAGCATA	LOC_Os06g21470
Os.27678.1.S1_at--701--789	1	Chr06:12407199..12407223 (25 bp)	GGTTCACCTGATAACAATCATCTGA	LOC_Os06g21470

Target Sequence

GTCCAACAAATGGATTGGGCCATCTTTTAGATAGTTCTTGTAAAAAACCAGCAGACATCATTGTAAATAAAACCACAAAT
TTCTCTTCAGCTGTCCTAGCAGTACCTGATGAACTTGATGAGCTGGATTCTCATCAAGTGAAGGTAAATCAGAAAGATTT
AACTGCAGTAGATCAAGGATTATCTTTGGAGCATAAAGTTGGAAGTAATGGGGGCAAAGCAGGAACCACAGGTTCACCTG
ATAACAATCATCTGA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis