Browse Element(s) Details


Os.27708.1.S1_at

Description gb:AK101964.1
DB_XREF= gi:32987173
TID=Os.27708.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.27708 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033076E11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033076E11, full insert sequence.
FL= gb:AK101964.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0152011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g01490Os.7825.1.S1_at11/114+324341..327600Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g01490Os.57170.1.S1_at1/114+324341..327600Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g01500Os.5883.1.S1_at11/114+337148..338134expressed protein
LOC_Os04g01500Os.37016.2.S1_x_at1/114+337148..338134expressed protein
LOC_Os04g01510Os.9305.2.S1_x_at11/114+344567..346003AGR_C_3597p, putative, expressed
LOC_Os04g01510Os.9305.1.S1_at11/114+344567..346003AGR_C_3597p, putative, expressed
LOC_Os04g01520Os.27708.1.S1_at11/114+348134..350988expressed protein
LOC_Os04g01530Os.12284.1.S1_at3/114+354853..357900Adenylate kinase, putative, expressed
LOC_Os04g01540Os.10129.1.S1_at11/114+361312..362957expressed protein
LOC_Os04g01550OsAffx.13611.1.S1_at11/114+365948..366956Peroxidase family protein
LOC_Os04g01550OsAffx.13611.1.S1_x_at11/114+365948..366956Peroxidase family protein
LOC_Os04g01560OsAffx.25822.1.S1_at11/114+372485..374831expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27708.1.S1_at--1041--7631Chr04:349873..349897 (25 bp)
GGGAGAGGCTCATCGATTTCAAGGA
LOC_Os04g01520
Os.27708.1.S1_at--738--9091Chr04:349822..349846 (25 bp)
TGCTCTACTTCAGCTACGGATTGCT
LOC_Os04g01520
Os.27708.1.S1_at--1161--3951Chr04:349806..349830 (25 bp)
CGGATTGCTGGACGCCATGTTCCAG
LOC_Os04g01520
Os.27708.1.S1_at--966--1371Chr04:349783..349807 (25 bp)
AGAGCCTCATCTACTGGATCATCGG
LOC_Os04g01520
Os.27708.1.S1_at--863--5631Chr04:349750..349769 (20 bp)
GACACCCAAATCCTCAGCAGATATG
LOC_Os04g01520
Os.27708.1.S1_at--743--4291Chr04:348551..348871 (25 bp)
CCTCAGCAGATATGTTGGATTCTAT
LOC_Os04g01520
Os.27708.1.S1_at--472--10571Chr04:348532..348556 (25 bp)
TTCTATAAGGGAGTGCAAAGTGCTG
LOC_Os04g01520
Os.27708.1.S1_at--460--3911Chr04:348510..348534 (25 bp)
CTGGAGCAGCTGTGGCATGGCAAAT
LOC_Os04g01520
Os.27708.1.S1_at--982--4451Chr04:348468..348492 (25 bp)
GCCTAATTTCGCAATTGATTGTGAA
LOC_Os04g01520
Os.27708.1.S1_at--440--51Chr04:348455..348479 (25 bp)
ATTGATTGTGAATTGGGCGCTTACT
LOC_Os04g01520
Os.27708.1.S1_at--745--8911Chr04:348426..348450 (25 bp)
TGAGCTACCCCTTGCTTGCACTCTT
LOC_Os04g01520
Target Sequence 
GGGAGAGGCTCATCGATTTCAAGGATGGGCGGCGGTACGCGGGGCCCTTCCTGCTCTACTTCAGCTACGGATTGCTGGAC
GCCATGTTCCAGAGCCTCATCTACTGGATCATCGGCGCCCTCGCCAACGACACCCAAATCCTCAGCAGATATGTTGGATT
CTATAAGGGAGTGCAAAGTGCTGGAGCAGCTGTGGCATGGCAAATTGATACCCANAAGACAANGCCTAATTTCGCAATTG
ATTGTGAATTGGGCGCTTACTNCCGTGAGCTACCCCTTGCTTGCACTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27708.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis