Browse Element(s) Details


Os.27782.1.S1_at

Description gb:AK105812.1
DB_XREF= gi:32991021
TID=Os.27782.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.27782 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-203-C03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-203-C03, full insert sequence.
FL= gb:AK105812.1 gb:AK069117.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5264011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g52594Os.11862.1.S1_at11/113+30107546..30124489NOT2/NOT3/NOT5 family protein, expressed
LOC_Os03g52594Os.11862.2.S1_at11/113+30107546..30124489NOT2/NOT3/NOT5 family protein, expressed
LOC_Os03g52594Os.51354.1.S1_at2/113+30107546..30124489NOT2/NOT3/NOT5 family protein, expressed
LOC_Os03g52594Os.51430.1.S1_at1/113+30107546..30124489NOT2/NOT3/NOT5 family protein, expressed
LOC_Os03g52620OsAffx.3585.1.S1_at11/113+30130103..30131323pentatricopeptide, putative
LOC_Os03g52630Os.10701.1.S1_at11/113+30132228..30135671endo-1,4-beta-glucanase Cel1, putative, expressed
LOC_Os03g52640Os.27782.1.S1_at11/113+30138771..30142128expressed protein
LOC_Os03g52650OsAffx.3586.1.S1_s_at11/113+30143453..30144678Syntaxin-related protein KNOLLE, putative, expressed
LOC_Os03g52660Os.5148.1.S1_at11/113+30147820..30149331ATP synthase F1, delta subunit family protein, expressed
LOC_Os03g52670Os.37935.1.S1_at11/113+30149372..30150915GRAM domain containing protein, expressed
LOC_Os03g52680Os.18485.1.S1_s_at11/113+30154305..30155477expressed protein
LOC_Os03g52690Os.12286.1.S1_at11/113+30156918..30160996CBS domain containing protein, expressed
LOC_Os03g52690Os.12286.1.S2_a_at11/113+30156918..30160996CBS domain containing protein, expressed
LOC_Os03g52690Os.39828.1.A1_s_at9/113+30156918..30160996CBS domain containing protein, expressed
LOC_Os03g52700Os.15893.1.A1_at9/113+30165974..30170841expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27782.1.S1_at--434--171Chr03:30139373..30139397 (25 bp)
ATTTATGGGCCAACCTGGGCTGAGA
LOC_Os03g52640
Os.27782.1.S1_at--562--7451Chr03:30139192..30139216 (25 bp)
GTGTCACCGCACTCTTGAACAGCAA
LOC_Os03g52640
Os.27782.1.S1_at--886--1571Chr03:30139157..30139181 (25 bp)
AGCTCCTCTCGAAACTATCAACAGT
LOC_Os03g52640
Os.27782.1.S1_at--287--6231Chr03:30139105..30139129 (25 bp)
GATGGACTACTGTCTAGTACACTGG
LOC_Os03g52640
Os.27782.1.S1_at--873--8311Chr03:30138996..30139020 (25 bp)
GGCTCACTGCGTTTCAAGGCATCAG
LOC_Os03g52640
Os.27782.1.S1_at--196--291Chr03:30138954..30138978 (25 bp)
ATAGTGACCTATCTCCACGTTGCTA
LOC_Os03g52640
Os.27782.1.S1_at--652--5871Chr03:30138928..30138952 (25 bp)
GAGCCTGACTCTATCTAGCATTGTA
LOC_Os03g52640
Os.27782.1.S1_at--948--591Chr03:30138899..30138923 (25 bp)
ATGCCTCGCCGGTGATATGATCTGA
LOC_Os03g52640
Os.27782.1.S1_at--385--6411Chr03:30138881..30138905 (25 bp)
GATCTGAGCCGTACATTTATGCATT
LOC_Os03g52640
Os.27782.1.S1_at--680--1171Chr03:30138847..30138871 (25 bp)
AGTACACTGGCTCTAGCTGCACAGG
LOC_Os03g52640
Os.27782.1.S1_at--992--911Chr03:30138825..30138849 (25 bp)
AGGCATTTGTGTGCTCAATCTCCAT
LOC_Os03g52640
Target Sequence 
ATTTATGGGCCAACCTGGGCTGAGAAGAAGAGGAGATCTTGAGATGATTTGTGAGACATTGAGGTATGCTAATTACTGGA
AAGGAACGCTGTCTCGACAGTGTCACCGCACTCTTGAACAGCAACGAGTGGCTCAGCTCCTCTCGAAACTATCAACAGTG
AAATTCATGGAACATCCTGTGGAGATGATGGACTACTGTCTAGTACACTGGAAGATTGTATGAGGGAGAGACAGAGAGTA
CTTCTCTTTCATTATAGTTCACCAATCCACATCCCAGAAGAAGAAAATGATCACTGGCTCACTGCGTTTCAAGGCATCAG
CATCAAGCCACCATGCGATAGTGACCTATCTCCACGTTGCTACGAGCCTGACTCTATCTAGCATTGTAGGTCATGCCTCG
CCGGTGATATGATCTGAGCCGTACATTTATGCATTCAGACATTCAGTACACTGGCTCTAGCTGCACAGGCATTTGTGTGC
TCAATCTCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27782.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis