Browse Element(s) Details


Os.27805.1.S1_at

Description gb:AK100086.1
DB_XREF= gi:32985295
TID=Os.27805.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.27805 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023003B15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023003B15, full insert sequence.
FL= gb:AK100086.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4800010/11magnesium transporter CorA-like family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g47960Os.55210.1.S1_at10/113+27214733..27217751HECT-domain-containing protein, putative, expressed
LOC_Os03g47970Os.2857.1.S1_at11/113+27218880..27223289GATA transcription factor 27, putative, expressed
LOC_Os03g47980Os.50357.1.S1_at10/113+27225595..27231444expressed protein
LOC_Os03g47990Os.54202.1.S1_at11/113+27232247..27235321OB-fold nucleic acid binding domain containing protein, expressed
LOC_Os03g48000Os.27805.1.S1_at10/113+27237026..27243529magnesium transporter CorA-like family protein, putative, expressed
LOC_Os03g48010OsAffx.13399.1.S1_at11/113+27246577..27249455expressed protein
LOC_Os03g48030Os.14520.1.S1_at11/113+27249900..27252172HPP family protein, expressed
LOC_Os03g48020Os.54898.1.S1_at11/113+27251268..27253126expressed protein
LOC_Os03g48040Os.50976.1.S1_at10/113+27259030..27262075ferredoxin family protein, expressed
LOC_Os03g48050Os.22656.1.A1_at11/113+27263450..27265346RNA methyltransferase, TrmH family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015693biological_processmagnesium ion transport
GO:0030001biological_processmetal ion transport
GO:0016020cellular_componentmembrane
GO:0015095molecular_functionmagnesium ion transporter activity
GO:0046873molecular_functionmetal ion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27805.1.S1_at--729--71NONE
ATTGCGGTCAACTTAAGCTCCCGGA
NONE
Os.27805.1.S1_at--472--1011Chr03:27242808..27242832 (25 bp)
AGGTTGGAACATTCTGCGTCGCCAT
LOC_Os03g48000
Os.27805.1.S1_at--1039--8251Chr03:27242974..27242998 (25 bp)
GGCATGAACCTTAAATCGTACCTCG
LOC_Os03g48000
Os.27805.1.S1_at--315--2371Chr03:27243003..27243123 (25 bp)
AAACGCGTGGGCATTTTGGGCGACA
LOC_Os03g48000
Os.27805.1.S1_at--827--5931Chr03:27243143..27243167 (25 bp)
GAGCAGTGGCTGGATTTTTCATCAT
LOC_Os03g48000
Os.27805.1.S1_at--645--3871Chr03:27243206..27243230 (25 bp)
CTGTAGCATTCGGTACTCCTAGGAA
LOC_Os03g48000
Os.27805.1.S1_at--882--1251Chr03:27243296..27243320 (25 bp)
AGATTGCTTTGATGCTCCCACGAAT
LOC_Os03g48000
Os.27805.1.S1_at--417--2531Chr03:27243343..27243367 (25 bp)
AACTTTGGACCAAGCGTTCGCTGCA
LOC_Os03g48000
Os.27805.1.S1_at--587--10631Chr03:27243359..27243383 (25 bp)
TTCGCTGCACGCCTGATGAAGCTAG
LOC_Os03g48000
Os.27805.1.S1_at--120--5851Chr03:27243398..27243422 (25 bp)
GACCATAGTATTTCGCATCTCTTAC
LOC_Os03g48000
Os.27805.1.S1_at--475--451Chr03:27243414..27243438 (25 bp)
ATCTCTTACATAAAGCCGTGGCGGT
LOC_Os03g48000
Target Sequence 
ATTGCGGTCAACTTAAGCTCCCGGAGACTTGAAGTAAGCAGAGTTGAGTTGCTTCTTCAGGTTGGAACATTCTGCGTCGC
CATAGGAGCATTAATTGCAGGAATATTTGGCATGAACCTTAAATCGTACCTCGAGACAAACGCGTGGGCATTTTGGGCGA
CAACTGGTGGAATAGTAGTTGGAGCAGTGGCTGGATTTTTCATCATGTACTCATACCTAAAGACTAGAAAGATATTGTAA
AACTCTGTAGCATTCGGTACTCCTAGGAATGTAAATAATTCGGTTTTGATCTCATTTTGAAAGCTATTGATGGAGGCACG
TACAGATTCATATGAGATTGCTTTGATGCTCCCACGAATGCTGTCGTGGGCGTCGGTTCTGAACTTTGGACCAAGCGTTC
GCTGCACGCCTGATGAAGCTAGCAGCCTAGCACCAAGACCATAGTATTTCGCATCTCTTACATAAAGCCGTGGCGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27805.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis