Browse Element(s) Details


Os.27842.1.S1_at

Description gb:AK060482.1
DB_XREF= gi:32970500
TID=Os.27842.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.27842 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-012-G12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-012-G12, full insert sequence.
FL= gb:AK060482.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5841011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g58360OsAffx.24923.1.S1_at11/112+35687740..35693548expressed protein
LOC_Os02g58370OsAffx.12690.1.S1_at11/112+35694546..35696195hypothetical protein
LOC_Os02g58380OsAffx.3102.1.S1_at11/112+35696788..35697622hypothetical protein
LOC_Os02g58390Os.6800.1.S1_x_at11/112+35699844..35704819Protein kinase domain containing protein, expressed
LOC_Os02g58400OsAffx.12691.1.S1_at9/112+35706934..35708962hypothetical protein
LOC_Os02g58410Os.27842.1.S1_at11/112+35712181..35724680expressed protein
LOC_Os02g58420NANA2+35725387..35725647hypothetical protein
LOC_Os02g58430OsAffx.13097.1.S1_s_at11/112+35726314..35731898transposon protein, putative, Mutator sub-class
LOC_Os02g58440Os.27604.1.S1_at11/112+35733119..35737451Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os02g58450Os.33786.1.S1_at11/112+35734968..35738793Uncharacterized ACR, COG1399 family protein, expressed
LOC_Os02g58450Os.17160.1.S1_s_at3/112+35734968..35738793Uncharacterized ACR, COG1399 family protein, expressed
LOC_Os02g58450OsAffx.13616.1.S1_x_at3/112+35734968..35738793Uncharacterized ACR, COG1399 family protein, expressed
LOC_Os02g58460Os.10719.1.S1_at11/112+35741366..35745423Beta-catenin-like protein 1, putative, expressed
LOC_Os02g58470Os.40059.1.S1_at11/112+35745597..35747736expressed protein
LOC_Os02g58480Os.52194.1.S1_at11/112+35749077..35755347Sucrose synthase 2, putative, expressed
LOC_Os02g58480Os.51168.1.S1_at11/112+35749077..35755347Sucrose synthase 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27842.1.S1_at--1008--6131Chr02:35724104..35724128 (25 bp)
GAGGGATCATAAGCGCCTTGTGCCG
LOC_Os02g58410
Os.27842.1.S1_at--125--4451Chr02:35724118..35724142 (25 bp)
GCCTTGTGCCGTTTGTGGCGAACAT
LOC_Os02g58410
Os.27842.1.S1_at--543--7011Chr02:35724227..35724251 (25 bp)
GTACAGCTAGGAGCGTGATCCAGAA
LOC_Os02g58410
Os.27842.1.S1_at--166--291Chr02:35724275..35724299 (25 bp)
ATAGAAGAAGCAGCACTTCCCGCCA
LOC_Os02g58410
Os.27842.1.S1_at--518--7431Chr02:35724351..35724375 (25 bp)
GTGTTTATTTATCCTGCAACCTCAC
LOC_Os02g58410
Os.27842.1.S1_at--149--3291Chr02:35724373..35724397 (25 bp)
CACAGAGGTCGCAGGTTTGAAGTAT
LOC_Os02g58410
Os.27842.1.S1_at--200--6971Chr02:35724402..35724426 (25 bp)
GTAGCTGTAGACTGCAATTCATTGG
LOC_Os02g58410
Os.27842.1.S1_at--739--1631Chr02:35724453..35724477 (25 bp)
AGCGAGTGGCACAAGCTCTTTTCTT
LOC_Os02g58410
Os.27842.1.S1_at--154--5211Chr02:35724508..35724532 (25 bp)
GAATTGCTTGGTGACATCCCGAAGG
LOC_Os02g58410
Os.27842.1.S1_at--1009--8111Chr02:35724538..35724562 (25 bp)
GGACTCCAGTGTAGTGTTTGATTCA
LOC_Os02g58410
Os.27842.1.S1_at--471--3051Chr02:35724608..35724632 (25 bp)
AATCTGTTTGATGTCGCTACCGTAG
LOC_Os02g58410
Target Sequence 
GAGGGATCATAAGCGCCTTGTGCCGTTTGTGGCGAACATCGGGTAGAAAATGCAGTTGAGTGACCTATGTAAAATGTTTG
GTGGCTATATGTGCTAACTGAATGAATGAATGCAGCCAATTTTGTACAGCTAGGAGCGTGATCCAGAAATCGCTGTGCAC
AGGTTGACAAGATAGAAGAAGCAGCACTTCCCGCCACCGAAAGACTACCCTAACCAAACTCAATTTTGACTGTTGTAATA
TCGGAATGTGTTTATTTATCCTGCAACCTCACAGAGGTCGCAGGTTTGAAGTATGGTTGTAGCTGTAGACTGCAATTCAT
TGGATGCACATACACATACATACAGCATGAGCGAGTGGCACAAGCTCTTTTCTTTTCTTTTTTTNNTTGGCTAGTGTGTA
TATTGGAATTGCTTGGTGACATCCCGAAGGGGAAGGGACTCCAGTGTAGTGTTTGATTCATTATTATTGTTACCTGTTGT
GTTCATTTATGCACGGAGACGATGTAATCTGTTTGATGTCGCTACCGTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27842.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis