Browse Element(s) Details


Os.27848.1.S1_at

Description gb:NM_192957.1
DB_XREF= gi:34912997
GEN=P0663E10.13
TID=Os.27848.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.27848 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0663E10.13 (P0663E10.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0663E10.13 (P0663E10.13), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4431011/11expressed protein
LOC_Os05g503701/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g44280OsAffx.11464.1.S1_at9/111+25735680..25738887expressed protein
LOC_Os01g44280Os.24674.1.S1_at1/111+25735680..25738887expressed protein
LOC_Os01g44290NANA1+25740335..25740811hypothetical protein
LOC_Os01g44310Os.27848.1.S1_at11/111+25744106..25752571expressed protein
LOC_Os01g44320OsAffx.23657.1.S1_at11/111+25754323..25755180hypothetical protein
LOC_Os01g44330Os.45945.1.S1_at11/111+25765930..25767927Multicopper oxidase family protein, expressed
LOC_Os01g44340OsAffx.21322.1.S1_at11/111+25769450..25770894Pectinesterase family protein
LOC_Os01g44350OsAffx.2233.1.S1_x_at11/111+25772094..25772717hypothetical protein
LOC_Os01g44360Os.23714.1.A1_at11/111+25775244..25777490CBS domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27848.1.S1_at--708--8891Chr01:25746913..25746937 (25 bp)
TGAGAGGGAACATCGCACAGCTGAG
LOC_Os01g44310
Os.27848.1.S1_at--851--4611Chr01:25746801..25746913 (25 bp)
GCGAGCGGCCAAAGCTCTAGCTGAA
LOC_Os01g44310
Os.27848.1.S1_at--905--3091Chr01:25746773..25746797 (25 bp)
AATATGCGGGACATGCTGGCTCAGA
LOC_Os01g44310
Os.27848.1.S1_at--707--1231Chr01:25746641..25746665 (25 bp)
AGATTAGCTGAATACCTTGACCCCG
LOC_Os01g44310
Os.27848.1.S1_at--778--8151Chr01:25746587..25746611 (25 bp)
GGAAATCTGCGAGCATTGCTATCTA
LOC_Os01g44310
Os.27848.1.S1_at--577--331Chr01:25745990..25746014 (25 bp)
ATAATGGTTGGCAATCGGTTCCCCT
LOC_Os01g44310
Os.27848.1.S1_at--219--1472Chr05:28787011..28787030 (20 bp)
AGAAGGGCAACCCTTTGTGTCCATC
LOC_Os05g50370
Os.27848.1.S1_at--122--8271Chr01:25745391..25745415 (25 bp)
GGCAGTATCCAAGCAACTTCTAACA
LOC_Os01g44310
Os.27848.1.S1_at--395--651Chr01:25745335..25745359 (25 bp)
ATGCAGCAGCACTATGTCTTACAAA
LOC_Os01g44310
Os.27848.1.S1_at--646--10131Chr01:25745287..25745311 (25 bp)
TATGCTTGTTACTTTTCATCTGGAG
LOC_Os01g44310
Os.27848.1.S1_at--1012--10231Chr01:25745253..25745277 (25 bp)
TTTGACTTCAGCAGTTTGTGCCCAG
LOC_Os01g44310
Target Sequence 
TGAGAGGGAACATCGCACAGCTGAGCGAGCGGCCAAAGCTCTAGCTGAAAAGAATATGCGGGACATGCTGGCTCAGAGAG
AGCAAGCAGAGAGACATAGATTAGCTGAATACCTTGACCCCGAAGTCAAGAGATGGTCAAATGGAAAGGAAGGAAATCTG
CGAGCATTGCTATCTACATTGCAATATATCCTTGGTTCAGATAATGGTTGGCAATCGGTTCCCCTCACAGATCTCATTAC
AGCAACTGCTGTCAAGAAAGCATATAGAAGGGCAACCCTTTGTGTCCATCCCGATAAACTACAACAAAGGGGTGCTACAA
TCAGACAGAAATATATTTGTGAGAAGGTGTTTGATCTTCTTAAGGCAGTATCCAAGCAACTTCTAACATGGATCTTGAAA
GCCATCATCATTGAGATTTATGCAGCAGCACTATGTCTTACAAATTTGATTGTAACCCAAGACTTTATATGCTTGTTACT
TTTCATCTGGAGCAGTATGGTTTTGACTTCAGCAGTTTGTGCCCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27848.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis