Browse Element(s) Details


Os.27862.1.S1_at

Description gb:AK106159.1
DB_XREF= gi:32991368
TID=Os.27862.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27862 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-208-A08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-208-A08, full insert sequence.
FL= gb:AK106159.1 gb:AK071115.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3826010/11harpin binding protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g38170Os.26840.1.S1_at11/1111+22129652..22136454Notchless homolog 1, putative, expressed
LOC_Os11g38170Os.23259.2.S1_x_at2/1111+22129652..22136454Notchless homolog 1, putative, expressed
LOC_Os11g38170Os.23259.1.S1_a_at1/1111+22129652..22136454Notchless homolog 1, putative, expressed
LOC_Os11g38180Os.57086.1.S1_at11/1111+22138020..22139689F-box domain containing protein, expressed
LOC_Os11g38190OsAffx.31360.1.S1_at11/1111+22141243..22142659hypothetical protein
LOC_Os11g38200OsAffx.31361.1.S1_at11/1111+22144469..22145890F-box domain containing protein
LOC_Os11g38210OsAffx.7335.1.S1_at11/1111+22148474..22148902expressed protein
LOC_Os11g38210Os.23172.1.S1_x_at1/1111+22148474..22148902expressed protein
LOC_Os11g38220OsAffx.19229.1.S1_s_at1/1111+22150250..22150678expressed protein
LOC_Os11g38220OsAffx.7335.1.S1_at1/1111+22150250..22150678expressed protein
LOC_Os11g38230OsAffx.19228.1.S1_at11/1111+22152816..22154225F-box domain containing protein
LOC_Os11g38240OsAffx.19229.1.S1_s_at11/1111+22155870..22156521expressed protein
LOC_Os11g38250Os.54000.1.S1_at11/1111+22157130..22158828expressed protein
LOC_Os11g38260Os.27862.1.S1_at10/1111+22159158..22161018harpin binding protein 1, putative, expressed
LOC_Os11g38260Os.12799.1.S1_s_at2/1111+22159158..22161018harpin binding protein 1, putative, expressed
LOC_Os11g38270OsAffx.31362.1.S1_at11/1111+22162134..22163672hypothetical protein
LOC_Os11g38280NANA11+22164708..22164968hypothetical protein
LOC_Os11g38290OsAffx.31422.1.S1_at10/1111+22169887..22171204hypothetical protein
LOC_Os11g38300OsAffx.31479.1.S1_x_at11/1111+22171353..22177438AT hook motif-containing protein, putative
LOC_Os11g38300OsAffx.31479.4.S1_x_at9/1111+22171353..22177438AT hook motif-containing protein, putative
LOC_Os11g38310OsAffx.31479.5.S1_x_at11/1111+22179008..22183269hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005198molecular_functionstructural molecule activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27862.1.S1_at--134--5751Chr11:22160122..22160146 (25 bp)
GACGGCGACGCTGGCTCACAAGTTT
LOC_Os11g38260
Os.27862.1.S1_at--1039--9431NONE
TCGGCACCTCGAGCATAAAGATCAC
NONE
Os.27862.1.S1_at--91--9651Chr11:22160726..22160750 (25 bp)
TCAGGGTGTTCGTCATCTCGTGATC
LOC_Os11g38260
Os.27862.1.S1_at--762--4031Chr11:22160760..22160784 (25 bp)
CGTTCGCGACATAGGTATGCGGCTT
LOC_Os11g38260
Os.27862.1.S1_at--722--611Chr11:22160776..22160800 (25 bp)
ATGCGGCTTGCGATTCTGAAACTGA
LOC_Os11g38260
Os.27862.1.S1_at--85--2551Chr11:22160801..22160825 (25 bp)
AACTGAAGCGCACACACGGTTTTGT
LOC_Os11g38260
Os.27862.1.S1_at--129--7431Chr11:22160824..22160848 (25 bp)
GTGTTCTTTCTCTGCTACTAGTAGA
LOC_Os11g38260
Os.27862.1.S1_at--1118--9891Chr11:22160839..22160863 (25 bp)
TACTAGTAGATCCTCACTCTCTTGA
LOC_Os11g38260
Os.27862.1.S1_at--448--2011Chr11:22160854..22160878 (25 bp)
ACTCTCTTGATCTGACCATCTTTGT
LOC_Os11g38260
Os.27862.1.S1_at--411--5851Chr11:22160867..22160891 (25 bp)
GACCATCTTTGTACTATACTTCAGT
LOC_Os11g38260
Os.27862.1.S1_at--637--10791Chr11:22160893..22160917 (25 bp)
TTGTTCGTGCGTTCTGTATTGTTAT
LOC_Os11g38260
Target Sequence 
GACGGCGACGCTGGCTCACAAGTTTGAGATCATCGGCACCTCGAGCATAAAGATCACATTCGACAAGACGACGGTGAAGA
CGAAGGGGAACCTGTCCCAGCTGCCGCCGCTGGAGGTCCCTCGCATCCCGGACAACCTCCGGCCGCCGTCCAACACCGGC
AGCGGCGAGTTCGAGGTGACCTACCTCGACGGCGACACCCGCATCACCCGCGGGGACAGAGGGGAGCTCAGGGTGTTCGT
CATCTCGTGATCGGACGGACGCGTTCGCGACATAGGTATGCGGCTTGCGATTCTGAAACTGAAACTGAAGCGCACACACG
GTTTTGTGTTCTTTCTCTGCTACTAGTAGATCCTCACTCTCTTGATCTGACCATCTTTGTACTATACTTCAGTATTGTTC
GTGCGTTCTGTATTGTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27862.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis